Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   BSN5_RS19915 Genome accession   NC_014976
Coordinates   3778917..3779366 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis BSn5     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3773917..3784366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSN5_RS19875 (BSn5_19545) ctaE 3773933..3774556 (+) 624 WP_015715836.1 cytochrome c oxidase subunit III -
  BSN5_RS19880 (BSn5_19550) ctaF 3774559..3774891 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  BSN5_RS19885 (BSn5_19555) ctaG 3774919..3775812 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  BSN5_RS19890 (BSn5_19560) ylbA 3775844..3776206 (-) 363 WP_003232238.1 YugN family protein -
  BSN5_RS19895 (BSn5_19565) ylbB 3776346..3776792 (+) 447 WP_003221362.1 CBS domain-containing protein -
  BSN5_RS19900 (BSn5_19570) ylbC 3776876..3777916 (+) 1041 WP_015715838.1 CAP domain-containing protein -
  BSN5_RS19905 (BSn5_19575) ylbD 3778148..3778546 (+) 399 WP_003232233.1 YlbD family protein -
  BSN5_RS19910 (BSn5_19580) ylbE 3778562..3778801 (+) 240 WP_003232231.1 YlbE-like family protein -
  BSN5_RS19915 (BSn5_19585) ylbF 3778917..3779366 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  BSN5_RS19920 (BSn5_19590) ylbG 3779421..3779693 (+) 273 WP_015715839.1 YlbG family protein -
  BSN5_RS19925 (BSn5_19595) rsmD 3780015..3780569 (+) 555 WP_015715840.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  BSN5_RS19930 (BSn5_19600) coaD 3780574..3781059 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  BSN5_RS19935 (BSn5_19605) spoVV 3781070..3782296 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  BSN5_RS19940 (BSn5_19610) ylbK 3782477..3783259 (+) 783 WP_003232221.1 patatin family protein -
  BSN5_RS19945 (BSn5_19615) sepM 3783261..3784286 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=33516 BSN5_RS19915 WP_003221370.1 3778917..3779366(+) (ylbF) [Bacillus subtilis BSn5]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=33516 BSN5_RS19915 WP_003221370.1 3778917..3779366(+) (ylbF) [Bacillus subtilis BSn5]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment