Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EKQ63_RS11965 Genome accession   NZ_CP034686
Coordinates   1915196..1915531 (+) Length   111 a.a.
NCBI ID   WP_143881061.1    Uniprot ID   A0A516QQU1
Organism   Bacillus sp. BD59S     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1910196..1920531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKQ63_RS11940 (EKQ63_11925) - 1910368..1911219 (-) 852 WP_143881060.1 hypothetical protein -
  EKQ63_RS11945 (EKQ63_11930) - 1911329..1911976 (+) 648 WP_087995112.1 HD domain-containing protein -
  EKQ63_RS11950 (EKQ63_11935) - 1911973..1913868 (+) 1896 WP_000783207.1 ABC-F family ATP-binding cassette domain-containing protein -
  EKQ63_RS11955 (EKQ63_11940) - 1913944..1914675 (+) 732 WP_001260642.1 Bax inhibitor-1/YccA family membrane protein -
  EKQ63_RS11960 (EKQ63_11945) - 1914782..1915036 (+) 255 WP_087952362.1 DUF4318 domain-containing protein -
  EKQ63_RS11965 (EKQ63_11950) ssbA 1915196..1915531 (+) 336 WP_143881061.1 single-stranded DNA-binding protein Machinery gene
  EKQ63_RS11970 (EKQ63_11955) - 1915937..1916695 (+) 759 WP_087949523.1 Nif3-like dinuclear metal center hexameric protein -
  EKQ63_RS11975 (EKQ63_11960) - 1917019..1918146 (+) 1128 WP_087952363.1 conserved virulence factor C family protein -
  EKQ63_RS11980 (EKQ63_11965) - 1918150..1918533 (+) 384 WP_143881062.1 thiol-disulfide oxidoreductase DCC family protein -
  EKQ63_RS11985 (EKQ63_11970) - 1918617..1919051 (+) 435 WP_000063713.1 BrxA/BrxB family bacilliredoxin -
  EKQ63_RS11990 (EKQ63_11975) - 1919101..1919877 (+) 777 WP_143881063.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12702.46 Da        Isoelectric Point: 9.0916

>NTDB_id=332489 EKQ63_RS11965 WP_143881061.1 1915196..1915531(+) (ssbA) [Bacillus sp. BD59S]
MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQADFINCVIWRKSAENVTEYCTKGSLVGITGRIQTS
NYDDEQGKRVYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=332489 EKQ63_RS11965 WP_143881061.1 1915196..1915531(+) (ssbA) [Bacillus sp. BD59S]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGTGTTGCGTATGC
ACGAGTATGTGTTGCAGTGAATAGAGGTTTTCGAAATAGTTTAGGTGAACAACAAGCCGATTTTATTAATTGTGTCATAT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTACGAAGGGCTCTCTTGTTGGGATTACAGGGCGTATTCAGACGAGT
AACTACGATGATGAGCAAGGCAAGAGAGTATATAGAACGGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A516QQU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

95.495

0.568
  ssb Latilactobacillus sakei subsp. sakei 23K

57.547

95.495

0.55
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.571

100

0.541
  ssbB Lactococcus lactis subsp. cremoris KW2

46.667

94.595

0.441
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbA Streptococcus mutans UA159

41.818

99.099

0.414
  ssbB/cilA Streptococcus mitis NCTC 12261

41.818

99.099

0.414
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.818

99.099

0.414
  ssbB/cilA Streptococcus pneumoniae D39

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae R6

40.909

99.099

0.405
  ssbB/cilA Streptococcus mitis SK321

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae Rx1

40.909

99.099

0.405

Multiple sequence alignment