Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | NX81_RS17480 | Genome accession | NZ_CP034649 |
| Coordinates | 3745840..3747093 (+) | Length | 417 a.a. |
| NCBI ID | WP_039433039.1 | Uniprot ID | - |
| Organism | Xanthomonas vasicola strain NCPPB 1060 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3740840..3752093
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NX81_RS17460 (NX81_017460) | pilR | 3741152..3742606 (+) | 1455 | WP_039446302.1 | sigma-54 dependent transcriptional regulator | Regulator |
| NX81_RS17470 (NX81_017470) | pilB | 3743219..3744952 (-) | 1734 | WP_039432925.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| NX81_RS17475 (NX81_017475) | pilA/pilAI | 3745081..3745488 (-) | 408 | WP_039433041.1 | pilin | Machinery gene |
| NX81_RS17480 (NX81_017480) | pilC | 3745840..3747093 (+) | 1254 | WP_039433039.1 | type II secretion system F family protein | Machinery gene |
| NX81_RS17485 (NX81_017485) | - | 3747100..3747963 (+) | 864 | WP_039446301.1 | A24 family peptidase | - |
| NX81_RS17490 (NX81_017490) | coaE | 3747977..3748618 (+) | 642 | WP_039432920.1 | dephospho-CoA kinase | - |
| NX81_RS17495 (NX81_017495) | - | 3748937..3749920 (-) | 984 | WP_053013007.1 | IS5 family transposase | - |
| NX81_RS17500 (NX81_017500) | - | 3750140..3751393 (+) | 1254 | WP_126922726.1 | RHS repeat protein | - |
Sequence
Protein
Download Length: 417 a.a. Molecular weight: 45451.55 Da Isoelectric Point: 10.1905
>NTDB_id=332115 NX81_RS17480 WP_039433039.1 3745840..3747093(+) (pilC) [Xanthomonas vasicola strain NCPPB 1060]
MSTVRSTSKSRSAPSSQLNPFVWEGKDKRGATMKGEQAARSANLLRAELRKQGITPTVVKPKPKPLFGAAGKKVTAKDIA
FFSRQMATMMKSGVPIVGALEIIGEGQKNPRMRIMVGQIRADIEGGSSLYEAISRHPVQFDELYRNLVRAGEGAGVLETV
LDTIANYKENIEALKGKIRKALFYPAMVMAVALLVSSILLIWVVPQFEDVFKGFGAELPAFTQMIVEASRFMVSWWWALL
IVTVGAVTGMIFAYKRSPAMQHKLDRLVLKFPVIGQIMHNSSVARFARTTAVTFKAGVPLVEALSIVAGATGNSVYEEAV
LRMRDDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIVGG
MVIGMYLPIFKLASVVG
MSTVRSTSKSRSAPSSQLNPFVWEGKDKRGATMKGEQAARSANLLRAELRKQGITPTVVKPKPKPLFGAAGKKVTAKDIA
FFSRQMATMMKSGVPIVGALEIIGEGQKNPRMRIMVGQIRADIEGGSSLYEAISRHPVQFDELYRNLVRAGEGAGVLETV
LDTIANYKENIEALKGKIRKALFYPAMVMAVALLVSSILLIWVVPQFEDVFKGFGAELPAFTQMIVEASRFMVSWWWALL
IVTVGAVTGMIFAYKRSPAMQHKLDRLVLKFPVIGQIMHNSSVARFARTTAVTFKAGVPLVEALSIVAGATGNSVYEEAV
LRMRDDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIVGG
MVIGMYLPIFKLASVVG
Nucleotide
Download Length: 1254 bp
>NTDB_id=332115 NX81_RS17480 WP_039433039.1 3745840..3747093(+) (pilC) [Xanthomonas vasicola strain NCPPB 1060]
ATGTCAACTGTACGTAGCACCTCGAAGTCAAGATCAGCACCTTCATCTCAGTTGAACCCGTTTGTCTGGGAGGGGAAAGA
CAAGCGCGGCGCAACGATGAAGGGAGAACAAGCCGCGCGTAGCGCAAATCTCCTGCGCGCCGAATTGCGCAAGCAGGGGA
TAACTCCCACCGTGGTTAAACCTAAGCCCAAGCCGCTGTTTGGCGCGGCCGGCAAGAAGGTTACCGCTAAAGACATCGCT
TTTTTTAGTAGGCAGATGGCGACAATGATGAAATCCGGCGTGCCGATCGTTGGCGCACTGGAAATAATCGGCGAGGGGCA
AAAAAATCCCCGGATGCGCATCATGGTTGGACAGATTCGCGCTGACATTGAGGGCGGCTCTTCGCTGTACGAAGCAATTA
GCAGGCATCCCGTTCAGTTCGATGAGTTGTACCGCAACCTTGTTCGAGCGGGTGAAGGCGCAGGTGTACTTGAGACCGTG
CTAGACACCATTGCCAACTACAAGGAAAACATTGAGGCACTCAAGGGAAAAATCCGAAAGGCGCTGTTCTACCCAGCCAT
GGTGATGGCCGTAGCCCTATTGGTTAGCTCAATCCTTCTGATCTGGGTAGTCCCGCAGTTTGAAGATGTTTTCAAAGGAT
TCGGCGCCGAGTTGCCGGCATTCACACAAATGATCGTAGAAGCTTCGCGCTTCATGGTTTCATGGTGGTGGGCACTGCTA
ATTGTGACGGTCGGCGCAGTTACTGGAATGATATTTGCCTACAAGCGCTCACCCGCGATGCAACATAAGCTTGACCGGCT
TGTGCTTAAATTTCCCGTGATTGGGCAGATCATGCATAACAGCTCGGTCGCGAGGTTTGCCCGAACAACGGCAGTGACCT
TCAAAGCCGGCGTTCCTCTTGTAGAGGCGCTGAGCATCGTTGCTGGCGCCACCGGAAACTCGGTATATGAGGAAGCAGTT
CTTCGTATGCGAGACGACGTTTCTGTTGGCTACCCAGTGAACGTGGCGATGAAGCAGGTCAACCTGTTCCCGCACATGGT
GGTTCAGATGACCGCTATCGGCGAAGAGGCGGGTGCGCTTGATGCAATGCTGTTTAAGGTTGCGGAGTACTTCGAGCAAG
AGGTCAACAACGCTGTGGACGCACTCAGCAGCCTTTTGGAACCGCTCATCATGGTGTTCATTGGTACCATCGTTGGTGGA
ATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAA
ATGTCAACTGTACGTAGCACCTCGAAGTCAAGATCAGCACCTTCATCTCAGTTGAACCCGTTTGTCTGGGAGGGGAAAGA
CAAGCGCGGCGCAACGATGAAGGGAGAACAAGCCGCGCGTAGCGCAAATCTCCTGCGCGCCGAATTGCGCAAGCAGGGGA
TAACTCCCACCGTGGTTAAACCTAAGCCCAAGCCGCTGTTTGGCGCGGCCGGCAAGAAGGTTACCGCTAAAGACATCGCT
TTTTTTAGTAGGCAGATGGCGACAATGATGAAATCCGGCGTGCCGATCGTTGGCGCACTGGAAATAATCGGCGAGGGGCA
AAAAAATCCCCGGATGCGCATCATGGTTGGACAGATTCGCGCTGACATTGAGGGCGGCTCTTCGCTGTACGAAGCAATTA
GCAGGCATCCCGTTCAGTTCGATGAGTTGTACCGCAACCTTGTTCGAGCGGGTGAAGGCGCAGGTGTACTTGAGACCGTG
CTAGACACCATTGCCAACTACAAGGAAAACATTGAGGCACTCAAGGGAAAAATCCGAAAGGCGCTGTTCTACCCAGCCAT
GGTGATGGCCGTAGCCCTATTGGTTAGCTCAATCCTTCTGATCTGGGTAGTCCCGCAGTTTGAAGATGTTTTCAAAGGAT
TCGGCGCCGAGTTGCCGGCATTCACACAAATGATCGTAGAAGCTTCGCGCTTCATGGTTTCATGGTGGTGGGCACTGCTA
ATTGTGACGGTCGGCGCAGTTACTGGAATGATATTTGCCTACAAGCGCTCACCCGCGATGCAACATAAGCTTGACCGGCT
TGTGCTTAAATTTCCCGTGATTGGGCAGATCATGCATAACAGCTCGGTCGCGAGGTTTGCCCGAACAACGGCAGTGACCT
TCAAAGCCGGCGTTCCTCTTGTAGAGGCGCTGAGCATCGTTGCTGGCGCCACCGGAAACTCGGTATATGAGGAAGCAGTT
CTTCGTATGCGAGACGACGTTTCTGTTGGCTACCCAGTGAACGTGGCGATGAAGCAGGTCAACCTGTTCCCGCACATGGT
GGTTCAGATGACCGCTATCGGCGAAGAGGCGGGTGCGCTTGATGCAATGCTGTTTAAGGTTGCGGAGTACTTCGAGCAAG
AGGTCAACAACGCTGTGGACGCACTCAGCAGCCTTTTGGAACCGCTCATCATGGTGTTCATTGGTACCATCGTTGGTGGA
ATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
53.283 |
94.964 |
0.506 |
| pilC | Legionella pneumophila strain ERS1305867 |
51.741 |
96.403 |
0.499 |
| pilC | Acinetobacter baylyi ADP1 |
50.614 |
97.602 |
0.494 |
| pilC | Acinetobacter baumannii D1279779 |
49.38 |
96.643 |
0.477 |
| pilG | Neisseria gonorrhoeae MS11 |
43 |
95.923 |
0.412 |
| pilG | Neisseria meningitidis 44/76-A |
42.5 |
95.923 |
0.408 |
| pilC | Vibrio cholerae strain A1552 |
41.75 |
95.923 |
0.4 |
| pilC | Vibrio campbellii strain DS40M4 |
39.454 |
96.643 |
0.381 |
| pilC | Thermus thermophilus HB27 |
38.725 |
97.842 |
0.379 |