Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NX81_RS17460 Genome accession   NZ_CP034649
Coordinates   3741152..3742606 (+) Length   484 a.a.
NCBI ID   WP_039446302.1    Uniprot ID   -
Organism   Xanthomonas vasicola strain NCPPB 1060     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3736152..3747606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX81_RS17440 (NX81_017440) - 3736448..3736732 (-) 285 WP_039433044.1 CopG family transcriptional regulator -
  NX81_RS23945 - 3736704..3736901 (-) 198 WP_039445992.1 hypothetical protein -
  NX81_RS17445 (NX81_017445) sucD 3736973..3737848 (-) 876 WP_010366205.1 succinate--CoA ligase subunit alpha -
  NX81_RS17450 (NX81_017450) sucC 3737873..3739042 (-) 1170 WP_010366204.1 ADP-forming succinate--CoA ligase subunit beta -
  NX81_RS17455 (NX81_017455) - 3739274..3740887 (+) 1614 WP_017117852.1 HAMP domain-containing sensor histidine kinase -
  NX81_RS17460 (NX81_017460) pilR 3741152..3742606 (+) 1455 WP_039446302.1 sigma-54 dependent transcriptional regulator Regulator
  NX81_RS17470 (NX81_017470) pilB 3743219..3744952 (-) 1734 WP_039432925.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NX81_RS17475 (NX81_017475) pilA/pilAI 3745081..3745488 (-) 408 WP_039433041.1 pilin Machinery gene
  NX81_RS17480 (NX81_017480) pilC 3745840..3747093 (+) 1254 WP_039433039.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52479.21 Da        Isoelectric Point: 6.9756

>NTDB_id=332112 NX81_RS17460 WP_039446302.1 3741152..3742606(+) (pilR) [Xanthomonas vasicola strain NCPPB 1060]
MGRDPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTDIARRYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFHAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGAASESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRPAATPGSAAVEPREAVLDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=332112 NX81_RS17460 WP_039446302.1 3741152..3742606(+) (pilR) [Xanthomonas vasicola strain NCPPB 1060]
TTGGGCCGCGACCCGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCTTGGGCCGCATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAGGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCTTGCCCGAT
GGCAATGGCATCGAACTGGTCACCGACATCGCCAGGCGGTACCCGCAGACGCCGGTGGCGATGATCACCGCCTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGTGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCTCCGCCACCGCCGCCACCAGAGCAGGCCAGCCGC
CTGCTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACGATCGGCAAGGTCGCGCGCAGCCAGGCACCGGTTTACAT
CGTCGGCGAATCGGGCGTCGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCG
TCCCGGTCAACTGCGGCGCCATTCCTGCCGAGCTGATGGAGAGCGAATTTTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCACGCCGCACACGGCGGCACGTTGTTTCTGGACGAAGTAGCAGAATTACCGCT
GCAGATGCAGGTCAAGCTACTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGCCGCCAGTGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACACACAAGGACCTGGGCGACTTGGTCTCCGACGGCCGCTTTCGGCATGACTTGTACTAC
CGCATCAACGTGATCGAACTACGCGTACCGCCGCTGCGCGAACGCGGCGGCGACCTGCCGCAACTGGCCGCCGCCATCAT
CGCGCGCCTGGCGCACAGCCACGGCCGCCCGATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCGCTGGCCGAGGACGACCAGATCAGCGCCACC
GACCTGCGCCTGCCTGCCCACGGCGGGCACCGCCCCGCCGCGACACCCGGCAGCGCTGCCGTCGAACCGCGCGAAGCCGT
CCTCGACATCGACCCCGCCTCGGCCGCCCTCCCCTCTTACATCGAGCAACTGGAACGCGCCGCAATCCAGAAAGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACCGCTGCGCAGTTAGGCATCACCTTTCGGGCGCTGCGTTACAAGTTGAAGAAG
TTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.499

95.661

0.607
  pilR Acinetobacter baumannii strain A118

48.387

96.074

0.465

Multiple sequence alignment