Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   SPJ_RS09150 Genome accession   NC_012466
Coordinates   1744925..1745305 (-) Length   126 a.a.
NCBI ID   WP_033621334.1    Uniprot ID   -
Organism   Streptococcus pneumoniae JJA     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1742847..1784874 1744925..1745305 within 0


Gene organization within MGE regions


Location: 1742847..1784874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPJ_RS09140 (SPJ_1840) groL 1742847..1744469 (-) 1623 WP_000031573.1 chaperonin GroEL -
  SPJ_RS09145 (SPJ_1841) groES 1744485..1744769 (-) 285 WP_000917299.1 co-chaperone GroES -
  SPJ_RS09150 (SPJ_1842) ssbB/cilA 1744925..1745305 (-) 381 WP_033621334.1 single-stranded DNA-binding protein Machinery gene
  SPJ_RS09155 (SPJ_1843) - 1745329..1745571 (-) 243 WP_000698517.1 hypothetical protein -
  SPJ_RS09160 (SPJ_1844) lytA 1745803..1746759 (-) 957 WP_000350534.1 N-acetylmuramoyl-L-alanine amidase LytA -
  SPJ_RS09165 (SPJ_1845) - 1746765..1747094 (-) 330 WP_001186214.1 phage holin -
  SPJ_RS09170 (SPJ_1846) - 1747098..1747397 (-) 300 WP_001810279.1 hypothetical protein -
  SPJ_RS09175 (SPJ_1847) - 1747407..1747757 (-) 351 WP_000852252.1 hypothetical protein -
  SPJ_RS09180 (SPJ_1848) - 1747760..1747963 (-) 204 WP_001019662.1 hypothetical protein -
  SPJ_RS12870 (SPJ_1849) - 1747944..1748060 (-) 117 WP_001063633.1 hypothetical protein -
  SPJ_RS13435 (SPJ_1850) - 1748057..1754383 (-) 6327 WP_000339666.1 tail fiber domain-containing protein -
  SPJ_RS09195 (SPJ_1851) - 1754388..1754738 (-) 351 WP_000068032.1 DUF6711 family protein -
  SPJ_RS09200 (SPJ_1852) - 1754747..1758400 (-) 3654 WP_000212179.1 hypothetical protein -
  SPJ_RS09205 (SPJ_1853) - 1758387..1758737 (-) 351 WP_000478015.1 hypothetical protein -
  SPJ_RS09210 (SPJ_1854) - 1758776..1759156 (-) 381 WP_001185634.1 DUF6096 family protein -
  SPJ_RS09215 (SPJ_1855) - 1759161..1759574 (-) 414 WP_000880674.1 phage tail tube protein -
  SPJ_RS09220 (SPJ_1856) - 1759577..1759945 (-) 369 WP_000608235.1 hypothetical protein -
  SPJ_RS09225 - 1759942..1760457 (-) 516 WP_000015942.1 HK97-gp10 family putative phage morphogenesis protein -
  SPJ_RS09230 (SPJ_1858) - 1760432..1760770 (-) 339 WP_000478945.1 hypothetical protein -
  SPJ_RS09235 (SPJ_1859) - 1760751..1761062 (-) 312 WP_000021220.1 phage head-tail connector protein -
  SPJ_RS09240 (SPJ_1860) - 1761064..1761252 (-) 189 WP_000669348.1 hypothetical protein -
  SPJ_RS09245 (SPJ_1861) - 1761242..1761424 (-) 183 WP_000054934.1 Rho termination factor N-terminal domain-containing protein -
  SPJ_RS09250 (SPJ_1862) - 1761436..1762281 (-) 846 WP_000123890.1 N4-gp56 family major capsid protein -
  SPJ_RS09255 (SPJ_1863) - 1762287..1762871 (-) 585 WP_001288021.1 DUF4355 domain-containing protein -
  SPJ_RS09260 (SPJ_1864) - 1763088..1763339 (-) 252 WP_000890163.1 DUF6275 family protein -
  SPJ_RS09265 (SPJ_1865) - 1763341..1763586 (-) 246 WP_000877357.1 hypothetical protein -
  SPJ_RS09270 (SPJ_1866) - 1763629..1764042 (-) 414 WP_000565276.1 HD domain-containing protein -
  SPJ_RS09275 (SPJ_1867) - 1764039..1764248 (-) 210 WP_000651747.1 hypothetical protein -
  SPJ_RS09280 (SPJ_1868) - 1764250..1765887 (-) 1638 WP_174222386.1 minor capsid protein -
  SPJ_RS09285 (SPJ_1869) - 1765796..1767265 (-) 1470 WP_000285401.1 phage portal protein -
  SPJ_RS09290 (SPJ_1870) - 1767277..1768575 (-) 1299 WP_000084426.1 PBSX family phage terminase large subunit -
  SPJ_RS09295 (SPJ_1871) - 1768553..1769053 (-) 501 WP_012677066.1 terminase small subunit -
  SPJ_RS09300 (SPJ_1873) - 1769461..1769865 (-) 405 WP_001030241.1 DUF1492 domain-containing protein -
  SPJ_RS09305 - 1769938..1770309 (-) 372 WP_001247150.1 hypothetical protein -
  SPJ_RS09310 (SPJ_1874) - 1770306..1770743 (-) 438 WP_000188937.1 YopX family protein -
  SPJ_RS09315 (SPJ_1875) - 1770755..1771177 (-) 423 WP_000140868.1 hypothetical protein -
  SPJ_RS09320 - 1771174..1771434 (-) 261 WP_000819325.1 DUF1372 family protein -
  SPJ_RS13605 (SPJ_1876) - 1771431..1771553 (-) 123 WP_001842508.1 hypothetical protein -
  SPJ_RS09325 (SPJ_1877) - 1771592..1772284 (-) 693 WP_001041158.1 DUF1642 domain-containing protein -
  SPJ_RS09330 (SPJ_1878) - 1772286..1772603 (-) 318 WP_000969674.1 hypothetical protein -
  SPJ_RS09335 - 1772628..1772810 (-) 183 WP_000796349.1 hypothetical protein -
  SPJ_RS09340 (SPJ_1879) - 1772826..1773257 (-) 432 WP_000779143.1 RusA family crossover junction endodeoxyribonuclease -
  SPJ_RS09345 (SPJ_1880) - 1773254..1773652 (-) 399 WP_000401829.1 hypothetical protein -
  SPJ_RS09350 (SPJ_1881) ssbA 1773665..1774081 (-) 417 WP_000609561.1 single-stranded DNA-binding protein Machinery gene
  SPJ_RS09355 - 1774176..1774511 (-) 336 WP_000598346.1 sporulation protein Cse60 -
  SPJ_RS09360 (SPJ_1883) - 1774504..1774827 (-) 324 WP_029743260.1 hypothetical protein -
  SPJ_RS09365 (SPJ_1884) - 1774995..1776059 (-) 1065 WP_001157032.1 DUF1351 domain-containing protein -
  SPJ_RS09370 (SPJ_1885) bet 1776069..1776887 (-) 819 WP_000184003.1 phage recombination protein Bet -
  SPJ_RS09375 (SPJ_1887) - 1777157..1777417 (-) 261 WP_000471459.1 hypothetical protein -
  SPJ_RS09380 (SPJ_1888) - 1777430..1777684 (-) 255 WP_000275523.1 hypothetical protein -
  SPJ_RS09385 (SPJ_1889) - 1777685..1777906 (-) 222 WP_000771950.1 hypothetical protein -
  SPJ_RS13105 (SPJ_1890) - 1777906..1778043 (-) 138 WP_000869368.1 hypothetical protein -
  SPJ_RS09390 (SPJ_1891) - 1778061..1778852 (-) 792 WP_224782006.1 ParB N-terminal domain-containing protein -
  SPJ_RS13110 (SPJ_1892) - 1778925..1779068 (-) 144 WP_000389583.1 hypothetical protein -
  SPJ_RS09395 (SPJ_1894) - 1779185..1779409 (+) 225 WP_000517704.1 DUF2188 domain-containing protein -
  SPJ_RS09400 (SPJ_1893) - 1779406..1779588 (-) 183 WP_001247797.1 hypothetical protein -
  SPJ_RS09405 (SPJ_1895) - 1779773..1780051 (-) 279 WP_000261154.1 HTH domain-containing protein -
  SPJ_RS09410 (SPJ_1896) - 1780218..1780454 (-) 237 WP_001157069.1 hypothetical protein -
  SPJ_RS09415 - 1780646..1780936 (-) 291 WP_000167802.1 hypothetical protein -
  SPJ_RS09420 (SPJ_1899) - 1781135..1781584 (+) 450 WP_001058908.1 hypothetical protein -
  SPJ_RS13115 (SPJ_1898) - 1781575..1781742 (-) 168 WP_001005822.1 hypothetical protein -
  SPJ_RS09425 (SPJ_1900) - 1781817..1782092 (-) 276 WP_001094380.1 hypothetical protein -
  SPJ_RS09430 (SPJ_1901) - 1782253..1783005 (+) 753 WP_001023158.1 S24 family peptidase -
  SPJ_RS09435 - 1783007..1783207 (+) 201 WP_000064302.1 hypothetical protein -
  SPJ_RS09440 (SPJ_1903) - 1783389..1784816 (+) 1428 WP_000633503.1 recombinase family protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14318.16 Da        Isoelectric Point: 5.2813

>NTDB_id=33170 SPJ_RS09150 WP_033621334.1 1744925..1745305(-) (ssbB/cilA) [Streptococcus pneumoniae JJA]
MLIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREVDFVNMVLWGRLAETLASYATKGSLISVDGELRTRRFEKN
GQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 381 bp        

>NTDB_id=33170 SPJ_RS09150 WP_033621334.1 1744925..1745305(-) (ssbB/cilA) [Streptococcus pneumoniae JJA]
ATCTTGATTGGACGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGCGCGAGCAACTATCGC
TGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGTTGATTTTGTCAATATGGTCCTATGGGGCAGACTAGCAG
AAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGTCGCTTTGAGAAAAAT
GGTCAGATGAATTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCAACGTGCTATGCGTGA
AAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

98.413

100

0.984
  ssbB/cilA Streptococcus pneumoniae Rx1

97.619

100

0.976
  ssbB/cilA Streptococcus pneumoniae D39

97.619

100

0.976
  ssbB/cilA Streptococcus pneumoniae R6

97.619

100

0.976
  ssbB/cilA Streptococcus mitis SK321

97.619

100

0.976
  ssbB/cilA Streptococcus mitis NCTC 12261

96.032

100

0.96
  ssbA Streptococcus mutans UA159

73.016

100

0.73
  ssbB Streptococcus sobrinus strain NIDR 6715-7

68.254

100

0.683
  ssbB Lactococcus lactis subsp. cremoris KW2

60.55

86.508

0.524
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.495

80.159

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

46.296

85.714

0.397

Multiple sequence alignment