Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   PAKB6_RS23950 Genome accession   NZ_CP034429
Coordinates   5056722..5057171 (-) Length   149 a.a.
NCBI ID   WP_003112842.1    Uniprot ID   P04739
Organism   Pseudomonas aeruginosa strain GIMC5015:PAKB6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5051722..5062171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAKB6_RS23930 (PAKB6_4727) ampD 5052414..5052980 (-) 567 WP_003112844.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  PAKB6_RS23935 (PAKB6_4728) - 5053131..5055386 (-) 2256 WP_003112843.1 DUF1631 domain-containing protein -
  PAKB6_RS23940 (PAKB6_4729) nadC 5055672..5056520 (+) 849 WP_003104915.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PAKB6_RS23950 (PAKB6_4730) pilA 5056722..5057171 (-) 450 WP_003112842.1 type 4a pilus biogenesis protein PilA Machinery gene
  PAKB6_RS23955 (PAKB6_4731) pilB 5057403..5059103 (+) 1701 WP_126213211.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PAKB6_RS23960 (PAKB6_4732) pilC 5059107..5060327 (+) 1221 WP_003112840.1 type 4a pilus biogenesis protein PilC Machinery gene
  PAKB6_RS23965 (PAKB6_4733) pilD 5060331..5061203 (+) 873 WP_003112839.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  PAKB6_RS23970 (PAKB6_4734) coaE 5061200..5061811 (+) 612 WP_003112838.1 dephospho-CoA kinase -
  PAKB6_RS23975 (PAKB6_4735) yacG 5061808..5062008 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 15511.78 Da        Isoelectric Point: 6.2905

>NTDB_id=331179 PAKB6_RS23950 WP_003112842.1 5056722..5057171(-) (pilA) [Pseudomonas aeruginosa strain GIMC5015:PAKB6]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQNYVARSEGASALATINPLKTTVEESLSRGIAGSKIKIGTTASTATETYV
GVEPDANKLGVIAVAIEDSGAGDITFTFQTGTSSPKNATKVITLNRTADGVWACKSTQDPMFTPKGCDN

Nucleotide


Download         Length: 450 bp        

>NTDB_id=331179 PAKB6_RS23950 WP_003112842.1 5056722..5057171(-) (pilA) [Pseudomonas aeruginosa strain GIMC5015:PAKB6]
ATGAAAGCTCAAAAAGGCTTTACCTTGATCGAACTGATGATCGTGGTTGCGATCATCGGTATCCTGGCGGCAATTGCCAT
TCCCCAGTATCAGAACTATGTTGCGCGTTCGGAAGGTGCTTCGGCGCTGGCGACGATCAACCCGCTGAAGACCACTGTTG
AAGAGTCGCTGTCGCGTGGAATTGCTGGTAGCAAAATTAAAATTGGTACTACTGCTTCTACTGCGACCGAAACATATGTC
GGCGTCGAGCCGGATGCCAACAAGTTGGGTGTAATTGCTGTAGCAATCGAAGATAGTGGTGCGGGTGATATTACCTTTAC
CTTCCAGACTGGTACCTCTAGTCCCAAGAATGCTACTAAAGTTATCACTCTGAACCGTACTGCGGATGGGGTCTGGGCTT
GTAAATCTACCCAGGATCCGATGTTCACTCCGAAAGGTTGTGATAACTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1PAN
  PDB 1PAO
  PDB 8TUM
  PDB 8TUW
  PDB 9EWX

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Pseudomonas aeruginosa PAK

67.785

100

0.678
  pilA Acinetobacter baumannii strain A118

48

100

0.483
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

48.322

100

0.483
  pilA Vibrio cholerae strain A1552

48.322

100

0.483
  pilA Vibrio cholerae C6706

48.322

100

0.483
  pilA/pilAI Pseudomonas stutzeri DSM 10701

45.638

100

0.456
  pilA Vibrio parahaemolyticus RIMD 2210633

44.898

98.658

0.443
  comP Acinetobacter baylyi ADP1

41.83

100

0.43
  pilA/pilAII Pseudomonas stutzeri DSM 10701

44.056

95.973

0.423
  pilA2 Legionella pneumophila str. Paris

38.776

98.658

0.383
  pilA2 Legionella pneumophila strain ERS1305867

38.095

98.658

0.376

Multiple sequence alignment