Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EGY09_RS15755 Genome accession   NZ_CP033829
Coordinates   3304143..3305402 (+) Length   419 a.a.
NCBI ID   WP_099605875.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain FDAARGOS_507     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3299143..3310402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY09_RS15735 (EGY09_15710) pilR 3299333..3300706 (+) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  EGY09_RS15740 (EGY09_15715) pilB 3300832..3302565 (-) 1734 WP_123958964.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EGY09_RS15745 (EGY09_15720) pilA/pilAI 3302788..3303195 (-) 408 WP_114619185.1 pilin Machinery gene
  EGY09_RS15750 (EGY09_15725) - 3303350..3303790 (-) 441 WP_005410798.1 pilin -
  EGY09_RS15755 (EGY09_15730) pilC 3304143..3305402 (+) 1260 WP_099605875.1 type II secretion system F family protein Machinery gene
  EGY09_RS15760 (EGY09_15735) - 3305410..3306273 (+) 864 WP_123958966.1 A24 family peptidase -
  EGY09_RS15765 (EGY09_15740) coaE 3306285..3306896 (+) 612 WP_123958968.1 dephospho-CoA kinase -
  EGY09_RS15770 (EGY09_15745) - 3307156..3307542 (-) 387 WP_005410802.1 hypothetical protein -
  EGY09_RS15775 (EGY09_15750) - 3308037..3309365 (-) 1329 WP_005410803.1 HAMP domain-containing sensor histidine kinase -
  EGY09_RS15780 (EGY09_15755) - 3309370..3310047 (-) 678 WP_005410804.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45892.29 Da        Isoelectric Point: 10.1071

>NTDB_id=326199 EGY09_RS15755 WP_099605875.1 3304143..3305402(+) (pilC) [Stenotrophomonas maltophilia strain FDAARGOS_507]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKSKPLFGAAGSPVKPKD
IAFFSRQMATMMKSGVPIVSALDIIASGHKNPRMKKLVDTIRTDIEGGSSMYEAVSKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQMVVNLSRFMVSWWWL
IFLIVVGSAVGAIMAYKRSPKMQHAMDRFVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=326199 EGY09_RS15755 WP_099605875.1 3304143..3305402(+) (pilC) [Stenotrophomonas maltophilia strain FDAARGOS_507]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGCGCCACCATGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGCGCCGAGCTGCGCCGCC
AAGGCATCAACCCGGGCCAGGTCAAGCCCAAGTCGAAGCCTCTGTTCGGCGCCGCCGGCAGCCCGGTCAAGCCGAAGGAC
ATCGCCTTCTTCAGCCGTCAGATGGCCACGATGATGAAATCCGGCGTGCCGATCGTGTCGGCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCACGGATGAAGAAACTGGTTGACACCATCCGCACCGACATCGAGGGCGGTTCCTCGATGTACGAAG
CGGTCAGCAAGCACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTGGTGCGGGCCGGCGAAGGCGCCGGCGTGCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAGAACATCGAAGCGCTGAAGGGCAAGATCAAGAAAGCGCTGTTCTACCC
GATCATGGTGGTCGTGGTGGCCATGCTGGTCAGCGGCATCATGCTGGTGTTCGTGGTCCCGCAGTTCGAGGACGTGTTCA
AGAGCTTTGGTGCCGAGCTGCCCGCCTTCACCCAGATGGTGGTGAACCTCTCGCGGTTCATGGTGTCGTGGTGGTGGCTG
ATATTCCTGATCGTGGTGGGCTCCGCTGTCGGTGCGATCATGGCCTACAAGCGCTCGCCGAAGATGCAGCATGCGATGGA
CCGGTTCGTGCTGAAGGTGCCGGTGATCGGGCAGATCATGCACAACAGCGCCATCGCCCGCTTCTCGCGCACCACCGCGG
TGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGCGCCACCGGCAATACCGTGTACGAAGAG
GCGGTGCTGCGCATGCGCGACGACGTTTCGGTCGGTTACCCGGTGAACATGTCGATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCTGGTGCGCTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.051

94.511

0.52
  pilC Legionella pneumophila strain ERS1305867

52.632

95.227

0.501
  pilC Acinetobacter baylyi ADP1

50.739

96.897

0.492
  pilC Acinetobacter baumannii D1279779

49.631

97.136

0.482
  pilG Neisseria gonorrhoeae MS11

44.638

95.704

0.427
  pilG Neisseria meningitidis 44/76-A

44.389

95.704

0.425
  pilC Vibrio cholerae strain A1552

42.118

96.897

0.408
  pilC Vibrio campbellii strain DS40M4

42.145

95.704

0.403
  pilC Thermus thermophilus HB27

37.562

95.943

0.36

Multiple sequence alignment