Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   EGY09_RS15735 Genome accession   NZ_CP033829
Coordinates   3299333..3300706 (+) Length   457 a.a.
NCBI ID   WP_005410795.1    Uniprot ID   A0A854E393
Organism   Stenotrophomonas maltophilia strain FDAARGOS_507     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3294333..3305706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY09_RS15720 (EGY09_15695) sucD 3295235..3296110 (-) 876 WP_005410793.1 succinate--CoA ligase subunit alpha -
  EGY09_RS15725 (EGY09_15700) sucC 3296132..3297301 (-) 1170 WP_004154430.1 ADP-forming succinate--CoA ligase subunit beta -
  EGY09_RS15730 (EGY09_15705) - 3297659..3299272 (+) 1614 WP_005414304.1 ATP-binding protein -
  EGY09_RS15735 (EGY09_15710) pilR 3299333..3300706 (+) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  EGY09_RS15740 (EGY09_15715) pilB 3300832..3302565 (-) 1734 WP_123958964.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EGY09_RS15745 (EGY09_15720) pilA/pilAI 3302788..3303195 (-) 408 WP_114619185.1 pilin Machinery gene
  EGY09_RS15750 (EGY09_15725) - 3303350..3303790 (-) 441 WP_005410798.1 pilin -
  EGY09_RS15755 (EGY09_15730) pilC 3304143..3305402 (+) 1260 WP_099605875.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49515.76 Da        Isoelectric Point: 6.4407

>NTDB_id=326196 EGY09_RS15735 WP_005410795.1 3299333..3300706(+) (pilR) [Stenotrophomonas maltophilia strain FDAARGOS_507]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNAERPAPGPNAEQGGRLLGHSQAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAQYAFPGNVRELENILERALALAEEDCIGADDLRLPQHAPRAPGSAAPAEAV
ADLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=326196 EGY09_RS15735 WP_005410795.1 3299333..3300706(+) (pilR) [Stenotrophomonas maltophilia strain FDAARGOS_507]
ATGAATGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCCGCCAACCTGGCCGAGGCACGTGAGCTGCTGGCCAGCAATCCGTACGATCTGTGCATCA
CCGACATGCGCCTGCCCGATGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCATTCGGCAGCATGGATCTCGCCGTGGAGGCGCTGAAGGCCGGTGCGTTCGATTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGCGGACTGGTCAAGCACGCGCTGGAACTCAACAACGCCGAGCGCCCCGCACCGGGCCCCAACG
CCGAACAGGGCGGGCGCCTGCTGGGCCACTCGCAGGCCATGGATGTGCTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGCGAGTCGGGCGTCGGCAAGGAGCTGGTCGCACGCACCATCCATGCCCAGGGCGCGCG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAGAGCGAATTCTTCGGCCACCGCA
AGGGCAGTTTCAGCGGCGCACACGCTGACAAGCCTGGCCTGTTCCAGGCTGCGCACGGCGGCACTCTGTTCCTGGACGAA
GTGGCTGAACTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCGCGGTGGGCGCGGC
CAACGAGGAGCCGGTGGATGTCCGTATCCTCTCGGCCACCCACAAGGACCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGAAGGTGCCGCCACTGCGCGAACGCCGCCAGGACCTGCCCGAA
CTGGCCGCCGCCGTGCTGGCCCGCCTGGCCCGCAGCCACGGCCGCGCCACCCCGCTGCTGGCGCCGTCGGCGCTGGAAGC
GCTGGCACAGTACGCGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATCCTGGAACGTGCGCTGGCCCTGGCCGAGGAAG
ACTGCATCGGCGCCGACGACCTGCGCCTGCCGCAGCACGCGCCGCGTGCACCTGGCAGTGCGGCGCCCGCCGAAGCGGTG
GCCGACCTGCAGCCGGGCAGTGCCGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCAGCGCCATCCAGCGTGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGTACCGCCGCGCAGCTGGGCATCACCTTCCGTGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(414-454)

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A854E393

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.656

99.344

0.632
  pilR Acinetobacter baumannii strain A118

48.38

100

0.49
  luxO Vibrio cholerae strain A1552

37.079

97.374

0.361

Multiple sequence alignment