Detailed information NTG0323594

Bioinformatically predicted

Overview

• Name: ssbB
• Type: Machinery gene
• Locus tag: D5285_RS20360
• Genome accession: NZ_CP033389
• Coordinates: 3972341..3972688 (-)
• Length: 115 a.a.
• NCBI ID: WP_020453204.1
• Uniprot ID: A0AAW6K4M3
• Organism: Bacillus paralicheniformis strain CBMAI 1303
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 3967341..3977688

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D5285_RS20330 (D5285_20330)	srlD	3967955..3968740 (-)	786	WP_020453198.1	sorbitol-6-phosphate dehydrogenase	-
D5285_RS20335 (D5285_20335)	-	3968755..3969126 (-)	372	WP_020453199.1	PTS glucitol/sorbitol transporter subunit IIA	-
D5285_RS20340 (D5285_20340)	-	3969150..3970157 (-)	1008	WP_020453200.1	PTS glucitol/sorbitol transporter subunit IIB	-
D5285_RS20345 (D5285_20345)	-	3970174..3970722 (-)	549	WP_020453201.1	PTS glucitol/sorbitol transporter subunit IIC	-
D5285_RS20350 (D5285_20350)	-	3970719..3971162 (-)	444	WP_020453202.1	transcriptional regulator GutM	-
D5285_RS20355 (D5285_20355)	-	3971159..3972121 (-)	963	WP_020453203.1	sugar-binding transcriptional regulator	-
D5285_RS20360 (D5285_20360)	ssbB	3972341..3972688 (-)	348	WP_020453204.1	single-stranded DNA-binding protein	Machinery gene
D5285_RS20365 (D5285_20365)	-	3972793..3973164 (-)	372	WP_020453205.1	hypothetical protein	-
D5285_RS20370 (D5285_20370)	-	3973346..3973759 (+)	414	WP_020453206.1	YwpF-like family protein	-
D5285_RS20375 (D5285_20375)	mscL	3973799..3974179 (-)	381	WP_020453207.1	large conductance mechanosensitive channel protein MscL	-
D5285_RS20380 (D5285_20380)	fabZ	3974249..3974683 (-)	435	WP_003185902.1	3-hydroxyacyl-ACP dehydratase FabZ	-
D5285_RS20385 (D5285_20385)	-	3974866..3975693 (-)	828	WP_020453208.1	flagellar hook-basal body protein	-
D5285_RS20390 (D5285_20390)	-	3975737..3976576 (-)	840	WP_020453209.1	flagellar hook-basal body protein	-

Sequence

Protein

• Length: 115 a.a.
• Molecular weight: 12795.52 Da
• Isoelectric Point: 6.9543

>NTDB_id=323594 D5285_RS20360 WP_020453204.1 3972341..3972688(-) (ssbB) [Bacillus paralicheniformis strain CBMAI 1303]
MFNEIMLVGRLTKDPELRYTSDGVPVANVTLAVSRPFKNAAGEIEADFVNCTLWRKTAVNTAEYCEKGSIIGLSGRIQTR
QYVNSEGERVFITEVVARSVRFLGESRKAHEPSEA

Nucleotide

• Length: 348 bp

>NTDB_id=323594 D5285_RS20360 WP_020453204.1 3972341..3972688(-) (ssbB) [Bacillus paralicheniformis strain CBMAI 1303]
ATGTTTAATGAGATCATGCTGGTCGGGCGTTTGACAAAAGATCCCGAACTTCGGTACACATCTGACGGTGTCCCTGTTGC
AAATGTGACGCTGGCTGTCAGCAGGCCTTTCAAAAATGCAGCAGGCGAAATTGAAGCGGACTTTGTCAATTGCACCCTGT
GGCGCAAAACTGCCGTGAATACAGCCGAATATTGCGAAAAAGGCTCCATCATCGGGCTGAGCGGAAGAATCCAGACTCGC
CAATACGTCAATTCAGAAGGCGAACGCGTCTTTATTACAGAAGTTGTCGCCCGATCAGTCAGATTTTTGGGAGAAAGCCG
AAAAGCCCATGAGCCGTCGGAAGCTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB	Bacillus subtilis subsp. subtilis str. 168	72.816	89.565	0.652
ssbA	Bacillus subtilis subsp. subtilis str. 168	60.194	89.565	0.539
ssb	Latilactobacillus sakei subsp. sakei 23K	52.252	96.522	0.504
ssbA	Streptococcus mutans UA159	45.794	93.043	0.426
ssbB	Lactococcus lactis subsp. cremoris KW2	44.34	92.174	0.409
ssbB	Streptococcus sobrinus strain NIDR 6715-7	43.925	93.043	0.409
ssbB/cilA	Streptococcus mitis NCTC 12261	42.991	93.043	0.4
ssbB/cilA	Streptococcus pneumoniae TIGR4	42.991	93.043	0.4
ssbB/cilA	Streptococcus pneumoniae Rx1	42.056	93.043	0.391
ssbB/cilA	Streptococcus pneumoniae D39	42.056	93.043	0.391
ssbB/cilA	Streptococcus pneumoniae R6	42.056	93.043	0.391
ssbB/cilA	Streptococcus mitis SK321	42.056	93.043	0.391