Detailed information NTG0322713

Bioinformatically predicted

Overview

• Name: ssbB
• Type: Machinery gene
• Locus tag: D9Y32_RS09055
• Genome accession: NZ_CP033218
• Coordinates: 1777923..1778270 (+)
• Length: 115 a.a.
• NCBI ID: WP_003185893.1
• Uniprot ID: A0AB37GL97
• Organism: Bacillus licheniformis strain TCCC 11148
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1772923..1783270

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9Y32_RS09025 (D9Y32_09035)	-	1774025..1774864 (+)	840	WP_003185907.1	flagellar hook-basal body protein	-
D9Y32_RS09030 (D9Y32_09040)	-	1774908..1775735 (+)	828	WP_003185904.1	flagellar hook-basal body protein	-
D9Y32_RS09035 (D9Y32_09045)	fabZ	1775929..1776360 (+)	432	Protein_1740	3-hydroxyacyl-ACP dehydratase FabZ	-
D9Y32_RS09040 (D9Y32_09050)	mscL	1776430..1776810 (+)	381	WP_003185900.1	large conductance mechanosensitive channel protein MscL	-
D9Y32_RS09045 (D9Y32_09055)	-	1776851..1777264 (-)	414	WP_003185898.1	YwpF-like family protein	-
D9Y32_RS09050 (D9Y32_09060)	-	1777446..1777817 (+)	372	WP_003185895.1	hypothetical protein	-
D9Y32_RS09055 (D9Y32_09065)	ssbB	1777923..1778270 (+)	348	WP_003185893.1	single-stranded DNA-binding protein	Machinery gene
D9Y32_RS09060 (D9Y32_09070)	-	1778492..1779454 (+)	963	WP_003185891.1	sugar-binding transcriptional regulator	-
D9Y32_RS09065 (D9Y32_09075)	-	1779451..1779894 (+)	444	WP_003185888.1	transcriptional regulator GutM	-
D9Y32_RS09070 (D9Y32_09080)	-	1779891..1780439 (+)	549	WP_003185886.1	PTS glucitol/sorbitol transporter subunit IIC	-
D9Y32_RS09075 (D9Y32_09085)	-	1780457..1781464 (+)	1008	WP_003185884.1	PTS glucitol/sorbitol transporter subunit IIB	-
D9Y32_RS09080 (D9Y32_09090)	-	1781489..1781860 (+)	372	WP_003185882.1	PTS glucitol/sorbitol transporter subunit IIA	-
D9Y32_RS09085 (D9Y32_09095)	srlD	1781875..1782660 (+)	786	WP_003185881.1	sorbitol-6-phosphate dehydrogenase	-

Sequence

Protein

• Length: 115 a.a.
• Molecular weight: 12753.44 Da
• Isoelectric Point: 6.9538

>NTDB_id=322713 D9Y32_RS09055 WP_003185893.1 1777923..1778270(+) (ssbB) [Bacillus licheniformis strain TCCC 11148]
MFNEIMLVGRLTKDPELRYTSDGVPVANVTLAVSRPFKNAAGEVEADFVNCTLWRKTAVNTAEYCEKGSIIGLSGRIQTR
QYVNSEGERTFITEVVARSVRFLGESRKAHEPADA

Nucleotide

• Length: 348 bp

>NTDB_id=322713 D9Y32_RS09055 WP_003185893.1 1777923..1778270(+) (ssbB) [Bacillus licheniformis strain TCCC 11148]
ATGTTTAATGAGATCATGCTCGTCGGGCGTTTGACAAAAGATCCCGAACTGCGGTATACATCTGACGGTGTCCCTGTTGC
AAATGTGACGCTGGCTGTCAGCAGGCCTTTCAAGAACGCAGCAGGCGAAGTAGAAGCGGACTTTGTCAATTGCACTCTAT
GGCGCAAAACTGCCGTGAACACAGCCGAATATTGCGAAAAAGGCTCCATCATCGGGCTGAGCGGAAGAATCCAGACCCGC
CAATACGTCAATTCAGAAGGCGAACGCACCTTTATTACAGAAGTTGTCGCCCGGTCAGTCAGATTTTTGGGAGAAAGCCG
GAAAGCGCATGAGCCGGCTGATGCTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB	Bacillus subtilis subsp. subtilis str. 168	70.874	89.565	0.635
ssbA	Bacillus subtilis subsp. subtilis str. 168	59.223	89.565	0.53
ssb	Latilactobacillus sakei subsp. sakei 23K	51.351	96.522	0.496
ssbA	Streptococcus mutans UA159	45.794	93.043	0.426
ssbB	Lactococcus lactis subsp. cremoris KW2	44.34	92.174	0.409
ssbB	Streptococcus sobrinus strain NIDR 6715-7	43.925	93.043	0.409
ssbB/cilA	Streptococcus mitis NCTC 12261	42.991	93.043	0.4
ssbB/cilA	Streptococcus pneumoniae TIGR4	42.991	93.043	0.4
ssbB/cilA	Streptococcus pneumoniae Rx1	42.056	93.043	0.391
ssbB/cilA	Streptococcus pneumoniae D39	42.056	93.043	0.391
ssbB/cilA	Streptococcus pneumoniae R6	42.056	93.043	0.391
ssbB/cilA	Streptococcus mitis SK321	42.056	93.043	0.391