Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PCC7424_RS15200 Genome accession   NC_011729
Coordinates   3447026..3448657 (+) Length   543 a.a.
NCBI ID   WP_015955082.1    Uniprot ID   B7KBC9
Organism   Gloeothece citriformis PCC 7424     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3442026..3453657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCC7424_RS15180 (PCC7424_3079) - 3442303..3442761 (-) 459 WP_015955078.1 hypothetical protein -
  PCC7424_RS15185 (PCC7424_3080) - 3443639..3444355 (-) 717 WP_015955079.1 SIMPL domain-containing protein -
  PCC7424_RS15190 (PCC7424_3081) - 3444609..3446375 (+) 1767 WP_015955080.1 hypothetical protein -
  PCC7424_RS15195 (PCC7424_3082) rsmD 3446398..3446940 (+) 543 WP_015955081.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PCC7424_RS15200 (PCC7424_3083) comA 3447026..3448657 (+) 1632 WP_015955082.1 DUF655 domain-containing protein Machinery gene
  PCC7424_RS15205 (PCC7424_3084) - 3448701..3449141 (+) 441 WP_015955083.1 hypothetical protein -
  PCC7424_RS15210 (PCC7424_3085) - 3449248..3449436 (-) 189 WP_015955084.1 hypothetical protein -
  PCC7424_RS15215 (PCC7424_3086) - 3449866..3451179 (-) 1314 WP_015955085.1 recombinase family protein -
  PCC7424_RS15220 (PCC7424_3087) - 3451179..3451568 (-) 390 WP_049858485.1 VOC family protein -
  PCC7424_RS15225 (PCC7424_3088) - 3451618..3451989 (-) 372 WP_015955087.1 hypothetical protein -

Sequence

Protein


Download         Length: 543 a.a.        Molecular weight: 60815.79 Da        Isoelectric Point: 5.6628

>NTDB_id=32142 PCC7424_RS15200 WP_015955082.1 3447026..3448657(+) (comA) [Gloeothece citriformis PCC 7424]
MFKFLLTLGISLCLSSCFQTTDLPRPQPLAQDPTVEVYFNQNFAKGSDYQDPYRNIKRPGDNLEQILIDTINQADSSIDI
AVQEFRLPKLAQALAKRRQEGLKIRVILENTYNRPFSQLTLTEIQNFSEREGDRYDDFFALADTNKDEKLTPEEIYQSDA
LVILNQAGIPIIDDTADGSKGSGLMHHKFVVIDGKTVIITSANFTLSDVHGDFLYSDSRGNANHLLKVKNPQLAQAFTEE
FNLMWGDGPGGKLDSLFGVNKPARKPVSIQLKDTKITLKFSPNSSVYPWETSSNGLINQTLDQAHSSVDLALFVFSEQRL
ANTLEKRHQNGATVRALIDPGFAFMTYSEGLDMLGVALSQKCQYEADNHPWQSPITTVGIPDLFSTDKLHHKFGIIDQNI
VITGSHNWSSSANNQNDETLIILESPIVAAHFQQEFERLYQKASLGIPTYIAQKIEQDRQTCSQFTTPVSQVAERQLINL
NTATLAELETLPGIGPSLAQKIIKTREEKPFTSVQDLERVAGIGENKLKKLQDKVFVYNKLKK

Nucleotide


Download         Length: 1632 bp        

>NTDB_id=32142 PCC7424_RS15200 WP_015955082.1 3447026..3448657(+) (comA) [Gloeothece citriformis PCC 7424]
ATGTTCAAATTTTTGTTGACTTTAGGAATTTCCTTGTGTCTATCTTCCTGTTTTCAAACGACTGATCTTCCTCGTCCTCA
ACCTCTAGCACAAGATCCGACAGTGGAAGTTTATTTTAATCAAAATTTTGCCAAAGGATCAGATTATCAAGACCCCTATC
GAAATATTAAACGACCCGGAGATAATCTAGAACAAATTTTAATCGATACTATCAATCAAGCTGATTCTAGTATTGATATT
GCTGTGCAAGAATTTCGCTTACCTAAACTGGCTCAAGCGTTAGCGAAACGTCGTCAAGAAGGCTTAAAAATACGAGTGAT
TTTAGAAAATACTTATAATCGTCCTTTTAGCCAGTTAACCCTTACAGAAATACAAAACTTTTCTGAACGAGAAGGCGATC
GTTATGATGACTTTTTTGCTTTAGCGGATACTAATAAAGATGAGAAATTAACTCCTGAAGAAATCTATCAAAGTGATGCT
CTAGTTATTTTAAATCAAGCCGGAATTCCCATTATCGATGATACGGCTGATGGGTCAAAAGGAAGCGGATTAATGCACCA
TAAATTTGTCGTCATTGATGGGAAAACTGTAATTATTACTTCTGCGAATTTTACCTTAAGTGATGTTCATGGAGATTTTT
TATACTCTGATAGTCGAGGCAACGCCAATCATCTCCTTAAAGTTAAAAATCCTCAATTAGCCCAAGCATTTACCGAAGAA
TTTAATTTAATGTGGGGAGATGGGCCAGGAGGTAAACTAGATAGTTTATTTGGGGTGAATAAACCCGCTAGAAAACCTGT
AAGCATTCAGTTAAAGGACACCAAAATTACTCTAAAATTTTCTCCTAATTCTTCTGTTTATCCTTGGGAAACCAGTAGTA
ACGGACTCATTAATCAAACCTTAGATCAAGCTCATTCATCAGTAGATTTAGCCCTATTTGTTTTTTCTGAGCAAAGACTA
GCCAACACCTTAGAAAAACGCCATCAAAACGGGGCGACAGTTAGAGCCTTAATTGATCCGGGTTTTGCTTTTATGACTTA
TAGTGAAGGGTTAGATATGTTAGGGGTTGCCCTCAGTCAAAAATGCCAATATGAAGCCGATAATCATCCTTGGCAATCTC
CAATTACTACCGTAGGAATTCCTGACTTATTCTCTACAGATAAATTACATCATAAATTTGGCATTATCGATCAAAATATA
GTGATTACAGGGTCTCATAACTGGTCGAGTTCTGCCAATAATCAAAATGATGAAACCTTAATCATTCTTGAAAGTCCTAT
AGTAGCTGCCCATTTTCAACAAGAATTTGAACGACTTTATCAAAAAGCGAGTTTAGGAATTCCTACATACATAGCTCAAA
AAATTGAACAAGATCGACAAACTTGTTCTCAATTCACAACCCCTGTTTCTCAAGTTGCCGAAAGACAATTAATTAATCTC
AATACAGCCACCTTAGCCGAATTAGAAACTTTACCCGGCATCGGGCCATCCTTAGCCCAAAAAATTATCAAAACCCGTGA
GGAAAAACCCTTTACCTCCGTCCAAGACTTAGAACGGGTTGCCGGAATTGGTGAAAATAAGCTAAAAAAGCTACAAGACA
AAGTTTTTGTCTACAATAAGCTCAAGAAATAG

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(67-245)

PLD-like domain (PLDc_2)

(297-439)

Helix-hairpin-helix motif (HHH_3)

(476-535)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7KBC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

51.55

95.028

0.49

Multiple sequence alignment