Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PCC7424_RS14785 Genome accession   NC_011729
Coordinates   3351494..3351865 (+) Length   123 a.a.
NCBI ID   WP_041237758.1    Uniprot ID   -
Organism   Gloeothece citriformis PCC 7424     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3346494..3356865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCC7424_RS14770 (PCC7424_2997) tilS 3346864..3347835 (+) 972 WP_015954996.1 tRNA lysidine(34) synthetase TilS -
  PCC7424_RS14775 (PCC7424_2998) hmpF 3347859..3349466 (-) 1608 WP_015954997.1 pilus motility taxis protein HmpF -
  PCC7424_RS14780 (PCC7424_2999) - 3349896..3351161 (+) 1266 WP_015954998.1 response regulator -
  PCC7424_RS14785 (PCC7424_3000) pilH 3351494..3351865 (+) 372 WP_041237758.1 response regulator transcription factor Machinery gene
  PCC7424_RS14790 (PCC7424_3001) - 3351999..3352529 (+) 531 WP_015955000.1 chemotaxis protein CheW -
  PCC7424_RS14795 (PCC7424_3002) pilJ 3352612..3355359 (+) 2748 WP_015955001.1 methyl-accepting chemotaxis protein Machinery gene
  PCC7424_RS14800 (PCC7424_3003) - 3355553..3356347 (+) 795 WP_015955002.1 MlaE family lipid ABC transporter permease subunit -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 14010.30 Da        Isoelectric Point: 5.2384

>NTDB_id=32140 PCC7424_RS14785 WP_041237758.1 3351494..3351865(+) (pilH) [Gloeothece citriformis PCC 7424]
MRKVLLVEDSQAQREMISTLLRENGWNVSIACDGVEALEFVQQSSPDLVVLDIVMPRMNGYEVCRRLKSDPKTMNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPIELIGTIKQLLRKET

Nucleotide


Download         Length: 372 bp        

>NTDB_id=32140 PCC7424_RS14785 WP_041237758.1 3351494..3351865(+) (pilH) [Gloeothece citriformis PCC 7424]
ATGAGAAAAGTTTTACTGGTAGAAGACTCTCAAGCGCAACGGGAAATGATTTCAACCCTATTGCGGGAAAATGGTTGGAA
TGTATCGATCGCCTGTGATGGGGTTGAAGCCCTAGAATTTGTGCAACAATCTAGTCCTGATCTGGTGGTCTTAGATATTG
TCATGCCACGCATGAATGGGTATGAGGTATGTCGTCGCCTCAAGTCCGATCCTAAGACGATGAATGTCCCCGTCGTGATG
TGTTCTTCTAAAGGGGAAGAATTCGATCGCTACTGGGGAATGAAACAAGGTGCGGATGCTTACATTGCCAAGCCTTTTCA
ACCGATCGAGTTGATTGGCACAATTAAACAATTATTAAGAAAGGAAACTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

81.667

97.561

0.797
  pilG Acinetobacter baumannii strain A118

40.87

93.496

0.382
  micA Streptococcus pneumoniae Cp1015

38.017

98.374

0.374
  chpA Acinetobacter baumannii strain A118

38.136

95.935

0.366
  vicR Streptococcus mutans UA159

37.19

98.374

0.366

Multiple sequence alignment