Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   PCC7424_RS16195 Genome accession   NC_011729
Coordinates   3683723..3684829 (-) Length   368 a.a.
NCBI ID   WP_015955283.1    Uniprot ID   B7KDY9
Organism   Gloeothece citriformis PCC 7424     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3678723..3689829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCC7424_RS16175 (PCC7424_3284) - 3678737..3679795 (+) 1059 WP_015955279.1 hypothetical protein -
  PCC7424_RS16180 (PCC7424_3285) - 3679854..3682058 (-) 2205 WP_015955280.1 secretin and TonB N-terminal domain-containing protein -
  PCC7424_RS16185 (PCC7424_3286) - 3682168..3682938 (-) 771 WP_015955281.1 pilus biosynthesis protein -
  PCC7424_RS16190 (PCC7424_3287) - 3682935..3683720 (-) 786 WP_015955282.1 PilN domain-containing protein -
  PCC7424_RS16195 (PCC7424_3288) pilM 3683723..3684829 (-) 1107 WP_015955283.1 type IV pilus assembly protein PilM Machinery gene
  PCC7424_RS16200 (PCC7424_3289) - 3685350..3686636 (+) 1287 WP_015955284.1 serine/threonine protein kinase -
  PCC7424_RS16205 (PCC7424_3290) - 3686905..3688176 (+) 1272 WP_015955285.1 ATP-binding protein -
  PCC7424_RS16210 (PCC7424_3291) - 3688184..3689074 (-) 891 WP_015955286.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41033.23 Da        Isoelectric Point: 4.3358

>NTDB_id=32145 PCC7424_RS16195 WP_015955283.1 3683723..3684829(-) (pilM) [Gloeothece citriformis PCC 7424]
MLTFFKNLLPNKSQGFGMEITPERVNLAQITKQGQNYRLAKFCTVDLPEGIFQEGKIVDSPALSEIIQEMLTEYKIKEKR
VATGVPMREAIIRIIPIPAQLDEQEMRDMVLNHEASLYLPYPREEVDLDYMKLGYFEDEDGIEKVQVLLVATRREVTNSY
LDTLQQVGLQVDVIEINSFALIRTIREQLRQFSSNEAAVLVDIQFDNTEIAIVVNGVPQFSRTVPIGTYQLQNALSRAMN
LPSSRSPDILQGMTIPVTAFDSLSTTGAAINPGMTALMRVLGELTDELRRSINFYLNQSEELEIVQLLLAGPGGGLAQLD
EFFTQRLSIPTMQIDPIAALSLTVDQEIASVQRPGLGTVLGLGLREVV

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=32145 PCC7424_RS16195 WP_015955283.1 3683723..3684829(-) (pilM) [Gloeothece citriformis PCC 7424]
ATGTTAACTTTTTTTAAGAATTTGCTTCCAAATAAATCACAAGGATTTGGGATGGAGATAACGCCAGAACGAGTTAATCT
GGCACAAATTACTAAACAAGGACAAAATTATCGTCTAGCGAAATTTTGTACCGTAGACCTCCCTGAAGGAATCTTCCAAG
AGGGAAAAATTGTCGATTCCCCGGCTTTATCGGAAATTATCCAAGAGATGTTGACCGAGTATAAGATTAAGGAAAAGCGG
GTAGCCACTGGTGTTCCCATGCGGGAAGCGATTATTCGGATTATTCCGATTCCGGCTCAACTTGACGAGCAGGAAATGCG
AGATATGGTACTTAATCATGAGGCGAGTTTATATTTACCTTATCCGAGAGAAGAGGTAGATCTCGACTATATGAAACTAG
GTTATTTTGAAGACGAAGATGGCATCGAAAAAGTTCAAGTGTTGCTGGTAGCTACTCGGCGAGAAGTAACTAACTCTTAT
TTAGACACTCTACAGCAAGTGGGATTACAAGTTGATGTGATCGAAATTAATAGTTTTGCTCTAATTCGGACAATTCGGGA
GCAACTGAGACAATTTAGTAGCAATGAAGCGGCGGTATTGGTAGATATTCAATTTGACAATACAGAAATAGCTATTGTTG
TTAATGGAGTTCCCCAATTTTCTCGTACAGTTCCCATCGGAACTTATCAATTACAAAATGCCCTTTCTAGAGCGATGAAT
TTACCCAGTTCAAGAAGTCCTGATATTCTTCAAGGGATGACTATTCCGGTTACAGCTTTTGATAGTCTCAGTACAACCGG
AGCAGCAATTAATCCGGGAATGACTGCTCTAATGAGAGTATTAGGGGAACTCACCGATGAATTACGTCGTTCCATAAACT
TTTATCTTAATCAAAGTGAAGAGTTAGAAATTGTACAATTATTACTGGCAGGGCCAGGAGGAGGATTAGCTCAATTGGAT
GAATTTTTTACTCAGCGATTAAGTATCCCTACCATGCAAATTGATCCGATCGCTGCCTTATCTTTAACTGTAGATCAAGA
AATTGCTTCAGTTCAACGACCGGGGTTAGGGACGGTATTAGGTTTAGGATTGCGAGAGGTGGTCTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7KDY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

77.322

99.457

0.769

Multiple sequence alignment