Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | D9779_RS18660 | Genome accession | NZ_CP033052 |
| Coordinates | 3608570..3608911 (-) | Length | 113 a.a. |
| NCBI ID | WP_010328864.1 | Uniprot ID | - |
| Organism | Bacillus vallismortis strain Bac111 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3603570..3613911
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D9779_RS18645 | - | 3603816..3606584 (+) | 2769 | WP_121643454.1 | DEAD/DEAH box helicase | - |
| D9779_RS18650 | - | 3606706..3607563 (-) | 858 | WP_121643455.1 | Cof-type HAD-IIB family hydrolase | - |
| D9779_RS18655 | glcR | 3607569..3608345 (-) | 777 | WP_010328863.1 | transcriptional regulator GlcR | - |
| D9779_RS18660 | ssbB | 3608570..3608911 (-) | 342 | WP_010328864.1 | single-stranded DNA-binding protein SsbB | Machinery gene |
| D9779_RS18665 | - | 3608988..3609371 (-) | 384 | WP_010328865.1 | hypothetical protein | - |
| D9779_RS18670 | - | 3609546..3609956 (+) | 411 | WP_010328866.1 | YwpF-like family protein | - |
| D9779_RS18675 | mscL | 3610111..3610503 (-) | 393 | WP_121643456.1 | large conductance mechanosensitive channel protein MscL | - |
| D9779_RS18680 | fabZ | 3610577..3611002 (-) | 426 | WP_010328868.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| D9779_RS18685 | - | 3611195..3612259 (+) | 1065 | WP_121643457.1 | tetratricopeptide repeat protein | - |
| D9779_RS18690 | flhP | 3612280..3613089 (-) | 810 | WP_010328870.1 | flagellar hook-basal body complex protein FlhP | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 12452.07 Da Isoelectric Point: 7.8150
>NTDB_id=320892 D9779_RS18660 WP_010328864.1 3608570..3608911(-) (ssbB) [Bacillus vallismortis strain Bac111]
MFNQVMLVGRLTKDPELRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENADGVNVYVTEVLADTVRFMDSKPREKAAD
MFNQVMLVGRLTKDPELRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENADGVNVYVTEVLADTVRFMDSKPREKAAD
Nucleotide
Download Length: 342 bp
>NTDB_id=320892 D9779_RS18660 WP_010328864.1 3608570..3608911(-) (ssbB) [Bacillus vallismortis strain Bac111]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGAGCTTCGCTACACTTCTGCCGGAGCGGCAGTTGC
ACACGTTACGCTCGCGGTAAACCGCAGTTTCAAGAATGCTTCAGGTGAAATCGAAGCCGATTACGTCAACTGCACGCTTT
GGAGAAAAACCGCTGAAAACACGGCGCTATATTGCCAAAAAGGTTCTCTCGTTGGTGTTAGCGGACGGATTCAGACAAGG
AGCTATGAAAACGCAGACGGCGTTAACGTGTATGTAACGGAAGTGTTGGCTGACACTGTTCGTTTTATGGACTCTAAACC
CCGGGAAAAAGCTGCCGATTGA
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGAGCTTCGCTACACTTCTGCCGGAGCGGCAGTTGC
ACACGTTACGCTCGCGGTAAACCGCAGTTTCAAGAATGCTTCAGGTGAAATCGAAGCCGATTACGTCAACTGCACGCTTT
GGAGAAAAACCGCTGAAAACACGGCGCTATATTGCCAAAAAGGTTCTCTCGTTGGTGTTAGCGGACGGATTCAGACAAGG
AGCTATGAAAACGCAGACGGCGTTAACGTGTATGTAACGGAAGTGTTGGCTGACACTGTTCGTTTTATGGACTCTAAACC
CCGGGAAAAAGCTGCCGATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
96.46 |
100 |
0.965 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
64.151 |
93.805 |
0.602 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.434 |
93.805 |
0.558 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
49.057 |
93.805 |
0.46 |
| ssbA | Streptococcus mutans UA159 |
47.17 |
93.805 |
0.442 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
47.17 |
93.805 |
0.442 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
47.17 |
93.805 |
0.442 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
46.226 |
93.805 |
0.434 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
46.226 |
93.805 |
0.434 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
46.226 |
93.805 |
0.434 |
| ssbB/cilA | Streptococcus mitis SK321 |
46.226 |
93.805 |
0.434 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
43.81 |
92.92 |
0.407 |