Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   D9842_RS18785 Genome accession   NZ_CP033043
Coordinates   3842330..3842677 (-) Length   115 a.a.
NCBI ID   WP_121663836.1    Uniprot ID   -
Organism   Metabacillus litoralis strain Bac94     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3837330..3847677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9842_RS18770 - 3837821..3840580 (+) 2760 WP_121663833.1 DEAD/DEAH box helicase -
  D9842_RS18775 - 3840729..3841112 (-) 384 WP_121663834.1 hypothetical protein -
  D9842_RS18780 - 3841185..3842054 (-) 870 WP_121663835.1 DUF6612 family protein -
  D9842_RS18785 ssbB 3842330..3842677 (-) 348 WP_121663836.1 single-stranded DNA-binding protein Machinery gene
  D9842_RS18790 - 3842862..3843269 (-) 408 WP_121663837.1 hypothetical protein -
  D9842_RS18795 - 3843577..3843963 (+) 387 WP_162987506.1 helix-turn-helix domain-containing protein -
  D9842_RS18800 - 3844040..3844363 (+) 324 WP_121663839.1 YwpF family protein -
  D9842_RS18805 cotJC 3844573..3845142 (-) 570 WP_121663840.1 spore coat protein CotJC -
  D9842_RS18810 - 3845637..3845903 (-) 267 WP_121663841.1 spore coat protein CotJB -
  D9842_RS18815 - 3845900..3846148 (-) 249 WP_121665131.1 spore coat associated protein CotJA -
  D9842_RS18820 - 3846315..3846641 (-) 327 WP_121663842.1 hypothetical protein -
  D9842_RS18825 fabZ 3846844..3847284 (-) 441 WP_121663843.1 3-hydroxyacyl-ACP dehydratase FabZ -
  D9842_RS18830 - 3847378..3847662 (-) 285 WP_180320399.1 DNA-directed RNA polymerase subunit beta -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12888.57 Da        Isoelectric Point: 8.4827

>NTDB_id=320623 D9842_RS18785 WP_121663836.1 3842330..3842677(-) (ssbB) [Metabacillus litoralis strain Bac94]
MINQIILVGRLTKDPEIRYTADGAPVANITLAVSRSFRNAAGEIETDFVNCTVWRRTAENTANYCRKGSIVGVTGRLQTR
SYENAEKTRVYVTEVVADSVRFMSSKPRELVEQES

Nucleotide


Download         Length: 348 bp        

>NTDB_id=320623 D9842_RS18785 WP_121663836.1 3842330..3842677(-) (ssbB) [Metabacillus litoralis strain Bac94]
GTGATCAATCAAATCATTTTGGTTGGAAGATTAACAAAAGATCCCGAAATTCGGTACACAGCAGATGGAGCACCAGTTGC
AAACATTACACTTGCGGTTAGCCGAAGTTTCCGAAATGCAGCTGGAGAAATTGAAACAGATTTTGTAAATTGTACGGTAT
GGAGACGAACTGCTGAGAATACGGCTAACTACTGCCGCAAAGGTTCAATCGTAGGAGTCACAGGTCGCCTCCAAACACGC
AGCTATGAAAATGCTGAAAAAACCCGTGTGTATGTTACAGAAGTTGTTGCTGACTCTGTTCGCTTTATGAGTAGCAAGCC
ACGTGAACTAGTTGAGCAAGAATCTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

72.477

94.783

0.687
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.264

92.174

0.574
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

92.174

0.522
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.593

93.913

0.4
  ssbA Streptococcus mutans UA159

41.667

93.913

0.391
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.667

93.913

0.391
  ssbB/cilA Streptococcus pneumoniae Rx1

40.741

93.913

0.383
  ssbB/cilA Streptococcus pneumoniae D39

40.741

93.913

0.383
  ssbB/cilA Streptococcus pneumoniae R6

40.741

93.913

0.383
  ssbB/cilA Streptococcus mitis SK321

40.741

93.913

0.383
  ssbB/cilA Streptococcus mitis NCTC 12261

39.815

93.913

0.374
  ssb Vibrio cholerae strain A1552

42.857

85.217

0.365

Multiple sequence alignment