Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   D9C09_RS00980 Genome accession   NZ_CP032852
Coordinates   196343..196684 (-) Length   113 a.a.
NCBI ID   WP_014481141.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain GFR-12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 191343..201684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C09_RS00960 (D9C09_00960) hepAB 191586..194354 (+) 2769 WP_014481139.1 DEAD/DEAH box helicase -
  D9C09_RS00970 (D9C09_00970) ywpJ 194480..195337 (-) 858 WP_014481140.1 phosphatase YwpJ -
  D9C09_RS00975 (D9C09_00975) glcR 195343..196119 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  D9C09_RS00980 (D9C09_00980) ssbB 196343..196684 (-) 342 WP_014481141.1 single-stranded DNA-binding protein SsbB Machinery gene
  D9C09_RS00985 (D9C09_00985) ywpG 196761..197143 (-) 383 Protein_190 DynA interaction protein YwpG -
  D9C09_RS00990 (D9C09_00990) ywpF 197318..197728 (+) 411 WP_014481144.1 YwpF-like family protein -
  D9C09_RS00995 (D9C09_00995) - 197868..198260 (-) 393 Protein_192 class A sortase -
  D9C09_RS23105 - 198247..198612 (-) 366 WP_260335148.1 prealbumin-like fold domain-containing protein -
  D9C09_RS01000 (D9C09_01000) ywpD 198520..199356 (+) 837 WP_014481147.1 histidine kinase -
  D9C09_RS01005 (D9C09_01005) mscL 199404..199799 (-) 396 WP_072592613.1 large conductance mechanosensitive channel protein MscL -
  D9C09_RS01010 (D9C09_01010) fabZ 199872..200297 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  D9C09_RS01015 (D9C09_01015) rapD 200489..201553 (+) 1065 WP_014481149.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12550.17 Da        Isoelectric Point: 6.9498

>NTDB_id=319142 D9C09_RS00980 WP_014481141.1 196343..196684(-) (ssbB) [Bacillus subtilis subsp. subtilis strain GFR-12]
MFNQVMLVGRLTKDPDLRYTSTGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=319142 D9C09_RS00980 WP_014481141.1 196343..196684(-) (ssbB) [Bacillus subtilis subsp. subtilis strain GFR-12]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCACCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

99.115

100

0.991
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment