Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AFLV_RS14790 Genome accession   NC_011567
Coordinates   2833297..2833788 (-) Length   163 a.a.
NCBI ID   WP_006321129.1    Uniprot ID   -
Organism   Anoxybacillus flavithermus WK1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2828297..2838788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AFLV_RS14770 (Aflv_2843) rplI 2829593..2830042 (-) 450 WP_012576314.1 50S ribosomal protein L9 -
  AFLV_RS14775 (Aflv_2844) - 2830039..2832012 (-) 1974 WP_012576315.1 DHH family phosphoesterase -
  AFLV_RS14780 (Aflv_2845) - 2832031..2832966 (-) 936 WP_012576316.1 YybS family protein -
  AFLV_RS14785 (Aflv_2846) rpsR 2833028..2833264 (-) 237 WP_003397568.1 30S ribosomal protein S18 -
  AFLV_RS14790 (Aflv_2847) ssbA 2833297..2833788 (-) 492 WP_006321129.1 single-stranded DNA-binding protein Machinery gene
  AFLV_RS14795 (Aflv_2848) rpsF 2833815..2834102 (-) 288 WP_009361077.1 30S ribosomal protein S6 -
  AFLV_RS14800 (Aflv_2849) ychF 2834207..2835307 (-) 1101 WP_012576319.1 redox-regulated ATPase YchF -
  AFLV_RS14805 (Aflv_2850) - 2835328..2835525 (-) 198 WP_032101644.1 DUF951 domain-containing protein -
  AFLV_RS14810 (Aflv_2851) - 2835546..2836421 (-) 876 WP_012576321.1 mechanosensitive ion channel family protein -
  AFLV_RS14815 (Aflv_2852) yyaC 2836603..2837193 (+) 591 WP_049754127.1 spore protease YyaC -
  AFLV_RS14820 (Aflv_2853) - 2837182..2837889 (-) 708 WP_012576323.1 DUF554 domain-containing protein -
  AFLV_RS14825 (Aflv_2854) - 2837907..2838770 (-) 864 WP_012576324.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18125.98 Da        Isoelectric Point: 4.6708

>NTDB_id=31864 AFLV_RS14790 WP_006321129.1 2833297..2833788(-) (ssbA) [Anoxybacillus flavithermus WK1]
MINRVILVGRLTKDPELRYTPNGVAVATFTLAVNRTYTNQQGEREADFINCIVWRRQAENVANYLKKGSLAGVEGRIQTR
SYENQEGKRVYVTEVVADSVQFLEPRSGGEQRGMASGSYGEPFPFGSNQNPNQGRSSGFSRIDDDPFANDGQPIDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=31864 AFLV_RS14790 WP_006321129.1 2833297..2833788(-) (ssbA) [Anoxybacillus flavithermus WK1]
ATGATTAATCGCGTAATTCTCGTCGGAAGACTGACGAAAGATCCAGAATTACGCTATACTCCAAATGGAGTTGCTGTTGC
CACGTTTACGCTAGCGGTGAATCGAACGTATACGAACCAACAAGGTGAACGTGAAGCCGATTTTATCAACTGTATCGTTT
GGCGCCGGCAAGCTGAAAATGTGGCGAACTACTTGAAAAAAGGTAGTTTAGCTGGAGTGGAAGGTCGAATTCAAACGAGA
TCGTATGAAAACCAAGAAGGAAAACGAGTGTACGTAACAGAGGTTGTCGCCGATAGCGTGCAGTTTTTAGAGCCGCGAAG
TGGCGGTGAACAGCGTGGCATGGCATCAGGCAGCTATGGCGAGCCGTTTCCATTTGGATCAAATCAGAACCCGAACCAAG
GACGTAGTAGTGGATTTAGTCGAATTGATGATGATCCATTTGCGAACGATGGACAACCAATCGACATATCGGACGATGAT
TTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.115

100

0.748
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.62
  ssbB Bacillus subtilis subsp. subtilis str. 168

66.038

65.031

0.429
  ssb Neisseria meningitidis MC58

36.158

100

0.393
  ssb Vibrio cholerae strain A1552

35.196

100

0.387
  ssb Neisseria gonorrhoeae MS11

35.593

100

0.387
  ssb Glaesserella parasuis strain SC1401

35.393

100

0.387
  ssbB/cilA Streptococcus pneumoniae TIGR4

48.387

76.074

0.368
  ssbB/cilA Streptococcus mitis SK321

47.581

76.074

0.362
  ssbB/cilA Streptococcus pneumoniae D39

47.581

76.074

0.362
  ssbB/cilA Streptococcus pneumoniae Rx1

47.581

76.074

0.362
  ssbB/cilA Streptococcus pneumoniae R6

47.581

76.074

0.362

Multiple sequence alignment