Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | VSAL_RS13785 | Genome accession | NC_011312 |
| Coordinates | 2845150..2845566 (+) | Length | 138 a.a. |
| NCBI ID | WP_012551085.1 | Uniprot ID | - |
| Organism | Aliivibrio salmonicida LFI1238 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2840150..2850566
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VSAL_RS13770 (VSAL_I2626) | pdhR | 2842192..2842962 (-) | 771 | WP_012551082.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| VSAL_RS13775 (VSAL_I2627) | ampD | 2843249..2843800 (-) | 552 | WP_012551083.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| VSAL_RS13780 (VSAL_I2628) | nadC | 2843914..2844801 (+) | 888 | WP_044583329.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| VSAL_RS13785 (VSAL_I2629) | pilA | 2845150..2845566 (+) | 417 | WP_012551085.1 | pilin | Machinery gene |
| VSAL_RS13790 (VSAL_I2630) | pilB | 2845569..2847260 (+) | 1692 | WP_012551086.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| VSAL_RS13795 (VSAL_I2631) | - | 2847288..2848525 (+) | 1238 | Protein_2677 | type II secretion system F family protein | - |
| VSAL_RS13800 (VSAL_I2632) | pilD | 2848634..2849521 (+) | 888 | WP_012551087.1 | A24 family peptidase | Machinery gene |
| VSAL_RS13805 (VSAL_I2633) | coaE | 2849518..2850141 (+) | 624 | WP_012551088.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 138 a.a. Molecular weight: 14337.54 Da Isoelectric Point: 6.2210
>NTDB_id=31659 VSAL_RS13785 WP_012551085.1 2845150..2845566(+) (pilA) [Aliivibrio salmonicida LFI1238]
MNKRQGQKGFTLIELMIVVAIIGVLSAIAIPAYKDYVSKSEAASGLATIKALQTPAELFFQESGTTQPTLAQLGTTAKAN
TLGVITDPLVDSAIVFTFGSDSALNGKTLTLARNSDTGWSCTPSTGVPVMDGCKIVTP
MNKRQGQKGFTLIELMIVVAIIGVLSAIAIPAYKDYVSKSEAASGLATIKALQTPAELFFQESGTTQPTLAQLGTTAKAN
TLGVITDPLVDSAIVFTFGSDSALNGKTLTLARNSDTGWSCTPSTGVPVMDGCKIVTP
Nucleotide
Download Length: 417 bp
>NTDB_id=31659 VSAL_RS13785 WP_012551085.1 2845150..2845566(+) (pilA) [Aliivibrio salmonicida LFI1238]
ATGAACAAGCGTCAAGGACAGAAAGGCTTCACCTTAATTGAATTAATGATCGTAGTTGCCATCATTGGTGTGTTATCAGC
AATAGCTATTCCTGCTTATAAAGATTATGTTTCAAAAAGTGAGGCTGCGTCTGGGTTAGCAACAATTAAAGCACTGCAAA
CACCGGCAGAATTATTCTTTCAAGAAAGCGGTACTACTCAACCAACATTAGCTCAACTAGGAACAACTGCTAAAGCAAAT
ACCTTAGGGGTAATAACAGATCCTCTTGTTGATAGCGCTATTGTATTTACTTTCGGTTCAGACAGTGCTTTAAATGGCAA
AACATTAACACTAGCAAGAAATTCTGACACTGGTTGGTCTTGTACTCCATCTACAGGTGTTCCTGTTATGGATGGTTGCA
AAATAGTAACACCATAA
ATGAACAAGCGTCAAGGACAGAAAGGCTTCACCTTAATTGAATTAATGATCGTAGTTGCCATCATTGGTGTGTTATCAGC
AATAGCTATTCCTGCTTATAAAGATTATGTTTCAAAAAGTGAGGCTGCGTCTGGGTTAGCAACAATTAAAGCACTGCAAA
CACCGGCAGAATTATTCTTTCAAGAAAGCGGTACTACTCAACCAACATTAGCTCAACTAGGAACAACTGCTAAAGCAAAT
ACCTTAGGGGTAATAACAGATCCTCTTGTTGATAGCGCTATTGTATTTACTTTCGGTTCAGACAGTGCTTTAAATGGCAA
AACATTAACACTAGCAAGAAATTCTGACACTGGTTGGTCTTGTACTCCATCTACAGGTGTTCCTGTTATGGATGGTTGCA
AAATAGTAACACCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
55.556 |
97.826 |
0.543 |
| pilA | Pseudomonas aeruginosa PAK |
45.185 |
97.826 |
0.442 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
45.736 |
93.478 |
0.428 |
| pilA | Vibrio cholerae C6706 |
42.857 |
96.377 |
0.413 |
| pilA | Vibrio cholerae strain A1552 |
42.857 |
96.377 |
0.413 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.857 |
96.377 |
0.413 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
42.969 |
92.754 |
0.399 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
43.548 |
89.855 |
0.391 |
| pilA | Acinetobacter baumannii strain A118 |
37.063 |
100 |
0.384 |
| pilA2 | Legionella pneumophila str. Paris |
40.945 |
92.029 |
0.377 |
| pilA/pilA1 | Eikenella corrodens VA1 |
37.778 |
97.826 |
0.37 |