Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   CDG60_RS16745 Genome accession   NZ_CP032134
Coordinates   3310500..3312620 (-) Length   706 a.a.
NCBI ID   WP_171405530.1    Uniprot ID   -
Organism   Acinetobacter chinensis strain WCHAc010005     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3305500..3317620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG60_RS16730 (CDG60_16730) - 3307982..3308809 (-) 828 WP_087512131.1 hypothetical protein -
  CDG60_RS16735 (CDG60_16735) aroB 3308820..3309899 (-) 1080 WP_087512130.1 3-dehydroquinate synthase -
  CDG60_RS16740 (CDG60_16740) aroK 3309925..3310464 (-) 540 WP_087512129.1 shikimate kinase AroK -
  CDG60_RS16745 (CDG60_16745) pilQ 3310500..3312620 (-) 2121 WP_171405530.1 type IV pilus secretin PilQ family protein Machinery gene
  CDG60_RS16750 (CDG60_16750) pilP 3312681..3313205 (-) 525 WP_087512127.1 pilus assembly protein PilP Machinery gene
  CDG60_RS16755 (CDG60_16755) pilO 3313205..3313924 (-) 720 WP_087512126.1 type 4a pilus biogenesis protein PilO Machinery gene
  CDG60_RS16760 (CDG60_16760) pilN 3313921..3314589 (-) 669 WP_087512125.1 PilN domain-containing protein Machinery gene
  CDG60_RS16765 (CDG60_16765) pilM 3314589..3315647 (-) 1059 WP_087512124.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 706 a.a.        Molecular weight: 76238.35 Da        Isoelectric Point: 5.3422

>NTDB_id=313840 CDG60_RS16745 WP_171405530.1 3310500..3312620(-) (pilQ) [Acinetobacter chinensis strain WCHAc010005]
MNNLFRQFSMGAVAMAVMQAASAQVSITNIVPMQIPGQGTEVRVMFNGLPPQPQAYQLENPSRLILDFDKAQQNLKQNSV
AVATSEASSVDVTSDAQRSRLTVNLADAGAFTTRVEGNTFILKINSAGVAGTAQPVAQKSAQGISNIGFNRGSDGEGLVV
IDLQGSNTPVDVQQQGSKIVVRTLGNKVPSHLTRRLNVNDFATPVSTIDAQNDGSNGVITIQSSGSYEYMAYQAENKLTI
SLKRPVDKNPLKPRAANTYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVSELIKAEEEEAKAIAQSVKLAPLQTEYIQLNYAKATDIEKLITQGKNSSNNRGAAADSDSVGSLLS
PRGTISVDPRTNTIIVNDTAQKIDQIRKMIDLLDVSVKQVMVEARIVRATTDFTKEMGVKWGILSQGITNNNNLLVGGSD
TTLWNLREPEEDSTTGGYKYTIERPQNLNVDLGVTTSGASKIAFGLISLSDFMLDLELSALQADGYGEVISTPKVLTADK
QAAKVMSGTQIPYQSAEGGGVNAVSKTEFVDATLSLDVTPSITPDGKIQMMLDITNDSVGTATPTGQFTINKNQINTNVL
VDNGETVVLGGIFEQVSTNTQIKVPFLGDLPYIGRLFRKDSKSDKKSELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2121 bp        

>NTDB_id=313840 CDG60_RS16745 WP_171405530.1 3310500..3312620(-) (pilQ) [Acinetobacter chinensis strain WCHAc010005]
ATGAACAATTTGTTCCGTCAGTTTTCAATGGGTGCAGTGGCAATGGCTGTTATGCAGGCTGCCAGCGCTCAGGTCAGTAT
TACGAATATCGTACCTATGCAGATACCGGGGCAGGGAACAGAAGTTCGCGTGATGTTCAATGGATTGCCTCCGCAGCCTC
AGGCTTATCAGCTTGAGAATCCATCCAGATTAATCCTGGATTTTGATAAGGCTCAGCAGAATCTGAAACAGAACTCAGTT
GCTGTAGCAACCAGTGAAGCAAGCTCTGTCGATGTGACTTCAGATGCACAGCGTTCCAGGCTGACGGTTAACCTTGCAGA
TGCCGGTGCTTTCACCACACGCGTTGAAGGTAATACGTTCATCCTGAAAATTAACTCTGCGGGTGTGGCGGGAACAGCTC
AGCCTGTTGCTCAGAAATCTGCACAGGGAATTTCCAATATTGGATTTAACAGAGGCTCTGATGGTGAAGGCCTTGTGGTG
ATTGATCTGCAGGGAAGCAATACACCTGTCGATGTTCAGCAGCAGGGCAGTAAGATCGTGGTCAGAACGCTGGGAAATAA
AGTTCCTTCGCATTTGACGCGCCGTCTGAATGTCAATGATTTTGCTACGCCTGTTTCAACCATTGATGCACAGAATGATG
GCAGTAATGGTGTGATCACGATTCAGTCATCTGGCAGCTACGAATACATGGCTTACCAGGCTGAGAATAAACTGACAATC
AGTCTGAAGCGACCAGTGGATAAAAACCCACTGAAACCACGTGCTGCTAATACCTATACAGGTAAGAAGATCTCCCTGGA
CTTCCAGGATATCGAAGTTCGTCGTGTACTCCAGTTATTGGCAGATTTTACCGGTATTAACATGGTGGCAGCAGATACGG
TTCAGGGAAATATCACTTTACGCCTGAAGGATGTTCCTTGGGATCAGGCACTCGATATTATTCTGAAAACCAAAAATCTT
GATAAACGCCGTAATGGCAACGTGATCTGGATTGCTCCGGTTTCAGAGTTGATCAAGGCTGAAGAAGAAGAAGCCAAAGC
AATCGCGCAGAGTGTGAAACTGGCACCTCTGCAGACTGAATATATTCAGCTGAACTATGCGAAAGCAACAGATATCGAAA
AACTGATTACACAGGGTAAAAACTCTTCAAACAATAGGGGGGCAGCGGCGGACTCTGACAGTGTCGGCAGTCTGCTTAGC
CCACGTGGAACAATTTCTGTTGATCCAAGAACCAACACGATTATTGTCAATGACACCGCGCAGAAGATTGATCAGATCCG
AAAAATGATCGACCTGTTGGATGTTTCTGTAAAACAGGTCATGGTTGAAGCGCGTATCGTCCGTGCAACAACTGACTTTA
CCAAAGAAATGGGCGTGAAATGGGGGATTCTGTCTCAGGGGATTACCAACAATAATAATCTGCTGGTTGGTGGTAGTGAT
ACGACCTTATGGAATCTTCGTGAACCTGAAGAAGATAGTACAACAGGCGGTTATAAGTACACAATTGAGCGTCCTCAGAA
CCTGAACGTTGACCTGGGTGTGACGACTTCTGGAGCAAGTAAAATTGCTTTTGGTCTGATCAGCCTGTCTGATTTTATGC
TGGATCTTGAATTGTCTGCATTACAGGCAGATGGCTACGGTGAAGTAATTTCAACACCAAAAGTTTTAACTGCAGATAAG
CAGGCTGCCAAAGTGATGTCCGGTACACAGATTCCTTATCAGTCAGCTGAAGGTGGTGGTGTAAATGCTGTGTCTAAGAC
AGAGTTTGTTGATGCAACGCTGAGTCTGGATGTGACACCAAGTATCACACCTGATGGTAAGATTCAGATGATGCTGGATA
TCACAAATGACTCAGTGGGTACTGCAACTCCAACGGGTCAGTTCACCATTAATAAAAACCAGATCAACACGAATGTGCTG
GTGGATAATGGTGAAACGGTCGTACTGGGTGGAATATTTGAACAGGTATCAACCAATACTCAGATCAAGGTGCCTTTCCT
GGGTGATCTGCCATATATTGGTCGACTGTTCCGTAAAGATTCCAAGTCTGACAAAAAGAGCGAGTTGCTGATTTTTGTTA
CACCACGAATAGTTAATGACAGTGTTTCGAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(540-698)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-439)

AMIN domain (AMIN)

(41-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

77.562

100

0.793
  pilQ Acinetobacter baumannii strain A118

77.424

100

0.792
  comQ Acinetobacter baylyi ADP1

73.464

100

0.745
  pilQ Pseudomonas aeruginosa PAK

41.787

98.3

0.411
  pilQ Legionella pneumophila strain ERS1305867

39.712

98.442

0.391
  pilQ Legionella pneumophila strain Lp02

39.281

98.442

0.387

Multiple sequence alignment