Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   CDG60_RS16760 Genome accession   NZ_CP032134
Coordinates   3313921..3314589 (-) Length   222 a.a.
NCBI ID   WP_087512125.1    Uniprot ID   A0A3B7LYZ8
Organism   Acinetobacter chinensis strain WCHAc010005     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3308921..3319589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG60_RS16740 (CDG60_16740) aroK 3309925..3310464 (-) 540 WP_087512129.1 shikimate kinase AroK -
  CDG60_RS16745 (CDG60_16745) pilQ 3310500..3312620 (-) 2121 WP_171405530.1 type IV pilus secretin PilQ family protein Machinery gene
  CDG60_RS16750 (CDG60_16750) pilP 3312681..3313205 (-) 525 WP_087512127.1 pilus assembly protein PilP Machinery gene
  CDG60_RS16755 (CDG60_16755) pilO 3313205..3313924 (-) 720 WP_087512126.1 type 4a pilus biogenesis protein PilO Machinery gene
  CDG60_RS16760 (CDG60_16760) pilN 3313921..3314589 (-) 669 WP_087512125.1 PilN domain-containing protein Machinery gene
  CDG60_RS16765 (CDG60_16765) pilM 3314589..3315647 (-) 1059 WP_087512124.1 pilus assembly protein PilM Machinery gene
  CDG60_RS16770 (CDG60_16770) ponA 3315813..3318389 (+) 2577 WP_087512123.1 penicillin-binding protein PBP1a -
  CDG60_RS16775 (CDG60_16775) - 3318467..3319270 (-) 804 WP_087512122.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24713.20 Da        Isoelectric Point: 5.1430

>NTDB_id=313843 CDG60_RS16760 WP_087512125.1 3313921..3314589(-) (pilN) [Acinetobacter chinensis strain WCHAc010005]
MARINLLPWRDALREKRKKEFIAICIGAALIGVLAVVLAWFFYDQKLQDQEQANQLVISTNQNLDVQLKSLEGLQDQRNA
IVERMKLIQGLQGQRPVTVRLVDELVRVTPTSMYITKFDRLGDKFTIEGKAESPNTVAEFLRNLEASPWYRNAFMNSFLA
KEEDKNKTQTSVVPRVEESYGTFVITADLDEIAAPVTSEKTADTAAVSVATTTTGSTAGAAQ

Nucleotide


Download         Length: 669 bp        

>NTDB_id=313843 CDG60_RS16760 WP_087512125.1 3313921..3314589(-) (pilN) [Acinetobacter chinensis strain WCHAc010005]
ATGGCAAGAATTAACCTGCTCCCTTGGCGTGATGCGTTAAGGGAAAAACGAAAAAAAGAATTTATAGCAATCTGTATTGG
GGCTGCTTTAATTGGGGTGCTTGCTGTTGTTCTGGCATGGTTCTTCTATGATCAGAAACTTCAGGATCAGGAACAGGCGA
ATCAGCTGGTGATCAGTACCAATCAGAATCTTGATGTTCAGCTCAAATCACTTGAGGGACTCCAGGATCAGCGTAATGCA
ATTGTGGAACGGATGAAGCTGATTCAGGGGCTGCAAGGGCAGAGACCGGTTACAGTACGTCTTGTGGATGAGCTTGTGCG
TGTTACGCCTACATCTATGTACATTACAAAGTTTGATCGGCTGGGAGATAAATTCACAATTGAAGGTAAGGCGGAAAGCC
CAAATACAGTGGCTGAATTCCTGAGAAATCTGGAAGCATCTCCGTGGTACCGCAACGCATTTATGAATTCATTCCTGGCA
AAAGAAGAAGATAAGAATAAAACCCAGACTTCAGTTGTGCCTCGTGTTGAAGAAAGCTATGGAACTTTTGTGATTACAGC
GGATCTCGACGAAATTGCAGCACCGGTAACATCAGAAAAAACTGCTGATACAGCAGCGGTATCTGTGGCTACAACAACGA
CGGGTTCAACAGCGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B7LYZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

65.766

100

0.658
  comN Acinetobacter baylyi ADP1

68.571

94.595

0.649

Multiple sequence alignment