Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   D2E16_RS00855 Genome accession   NZ_CP032064
Coordinates   142571..143521 (+) Length   316 a.a.
NCBI ID   WP_100664710.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 137571..148521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS00830 (D2E16_00860) - 138794..139153 (+) 360 WP_192369874.1 DUF1033 family protein -
  D2E16_RS00835 (D2E16_00865) - 139457..140809 (-) 1353 WP_194472476.1 IS66-like element short variant transposase -
  D2E16_RS00840 (D2E16_00870) - 140763..140969 (-) 207 WP_002941576.1 hypothetical protein -
  D2E16_RS00845 (D2E16_00875) tnpB 141021..141371 (-) 351 WP_002941575.1 IS66 family insertion sequence element accessory protein TnpB -
  D2E16_RS00850 (D2E16_00880) - 141622..142485 (-) 864 Protein_133 S66 family peptidase -
  D2E16_RS00855 (D2E16_00885) comYA 142571..143521 (+) 951 WP_100664710.1 competence type IV pilus ATPase ComGA Machinery gene
  D2E16_RS00860 (D2E16_00890) comYB 143433..144470 (+) 1038 WP_225620794.1 competence type IV pilus assembly protein ComGB Machinery gene
  D2E16_RS00865 (D2E16_00895) comYC 144472..144753 (+) 282 WP_044765768.1 competence type IV pilus major pilin ComGC Machinery gene
  D2E16_RS00870 (D2E16_00900) comGD 144734..145141 (+) 408 WP_029173989.1 competence type IV pilus minor pilin ComGD -
  D2E16_RS00875 (D2E16_00905) comYE 145113..145406 (+) 294 WP_192369520.1 competence type IV pilus minor pilin ComGE Machinery gene
  D2E16_RS00880 (D2E16_00910) comGF/cglF 145393..145827 (+) 435 WP_044765773.1 competence type IV pilus minor pilin ComGF Machinery gene
  D2E16_RS00885 (D2E16_00915) comGG 145805..146332 (+) 528 WP_192369521.1 competence type IV pilus minor pilin ComGG -
  D2E16_RS00890 (D2E16_00920) comYH 146388..147341 (+) 954 WP_192369522.1 class I SAM-dependent methyltransferase Machinery gene

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35511.29 Da        Isoelectric Point: 5.2978

>NTDB_id=313507 D2E16_RS00855 WP_100664710.1 142571..143521(+) (comYA) [Streptococcus suis strain YSJ17]
MIQEKARKMIEEAVTDRVSDIYLVPRGQDYQVYHRIMDEREFVQDVAEEEVTAIISHFKFLAGLNVGEKRRSQQGSCDYD
YGSGEISLRLSTVGDYRGKESLVIRLLYDNDKELKFWFEAAERLAEEIKGRGLYLFSGPVGSGKTTLMYHLARLKFPDKQ
ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVIRASLTGATVFSTVHARSISGVY
ARMLELGVSPEELNNALQGIAYQRLIGGGGVVDFAKGNYQNHSADQWNEQIDRLFAAGHISLRQAETEKIALGSPA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=313507 D2E16_RS00855 WP_100664710.1 142571..143521(+) (comYA) [Streptococcus suis strain YSJ17]
ATGATACAAGAAAAAGCAAGAAAGATGATTGAAGAGGCGGTGACAGATAGGGTCAGTGACATTTATCTGGTTCCTCGTGG
TCAGGACTACCAAGTCTACCACCGCATCATGGACGAGCGGGAGTTTGTGCAAGACGTGGCTGAGGAGGAAGTAACAGCCA
TCATCAGCCATTTCAAGTTTTTAGCAGGTTTAAATGTTGGTGAAAAACGCCGTAGCCAGCAGGGTTCCTGTGACTATGAT
TATGGGAGCGGAGAGATTTCACTTCGCTTATCAACTGTCGGAGATTATCGTGGCAAGGAAAGTCTGGTTATCCGCCTGCT
CTATGACAATGACAAGGAACTCAAGTTCTGGTTTGAGGCGGCCGAGCGACTTGCAGAAGAAATCAAGGGACGAGGGCTCT
ACCTTTTTTCGGGTCCAGTCGGCTCTGGTAAGACCACCCTTATGTACCATCTTGCCAGGCTGAAATTCCCAGACAAACAG
ATTTTGACCATTGAAGATCCTGTCGAAATCAAGCAGGAGGATATGTTGCAACTCCAACTCAATGAAGCCATCGGAGCCAC
CTACGACAATTTGATAAAATTATCCCTGCGTCATCGGCCAGACTTGCTCATCATCGGTGAAATTCGGGATGCGGAAACGG
CACGGGCGGTCATCAGGGCCAGCCTGACAGGTGCGACGGTTTTCTCAACGGTTCACGCAAGGTCTATTTCAGGTGTCTAC
GCCCGTATGTTAGAACTAGGTGTCAGCCCTGAGGAGCTAAACAATGCCCTTCAAGGGATTGCCTATCAACGCTTGATCGG
GGGAGGAGGTGTAGTGGATTTTGCAAAGGGAAATTACCAAAACCATTCCGCAGACCAGTGGAATGAACAAATTGATCGCC
TTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTGCCCTTGGCTCGCCAGCGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus gordonii str. Challis substr. CH1

68.71

98.101

0.674
  comYA Streptococcus mutans UA159

67.524

98.418

0.665
  comYA Streptococcus mutans UA140

67.524

98.418

0.665
  comGA/cglA/cilD Streptococcus pneumoniae D39

65.595

98.418

0.646
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

65.595

98.418

0.646
  comGA/cglA/cilD Streptococcus pneumoniae R6

65.595

98.418

0.646
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

65.595

98.418

0.646
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

64.952

98.418

0.639
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

65.161

98.101

0.639
  comGA Lactococcus lactis subsp. cremoris KW2

53.943

100

0.541

Multiple sequence alignment