Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   D2E16_RS00875 Genome accession   NZ_CP032064
Coordinates   145113..145406 (+) Length   97 a.a.
NCBI ID   WP_192369520.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 140113..150406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS00840 (D2E16_00870) - 140763..140969 (-) 207 WP_002941576.1 hypothetical protein -
  D2E16_RS00845 (D2E16_00875) tnpB 141021..141371 (-) 351 WP_002941575.1 IS66 family insertion sequence element accessory protein TnpB -
  D2E16_RS00850 (D2E16_00880) - 141622..142485 (-) 864 Protein_133 S66 family peptidase -
  D2E16_RS00855 (D2E16_00885) comYA 142571..143521 (+) 951 WP_100664710.1 competence type IV pilus ATPase ComGA Machinery gene
  D2E16_RS00860 (D2E16_00890) comYB 143433..144470 (+) 1038 WP_225620794.1 competence type IV pilus assembly protein ComGB Machinery gene
  D2E16_RS00865 (D2E16_00895) comYC 144472..144753 (+) 282 WP_044765768.1 competence type IV pilus major pilin ComGC Machinery gene
  D2E16_RS00870 (D2E16_00900) comGD 144734..145141 (+) 408 WP_029173989.1 competence type IV pilus minor pilin ComGD -
  D2E16_RS00875 (D2E16_00905) comYE 145113..145406 (+) 294 WP_192369520.1 competence type IV pilus minor pilin ComGE Machinery gene
  D2E16_RS00880 (D2E16_00910) comGF/cglF 145393..145827 (+) 435 WP_044765773.1 competence type IV pilus minor pilin ComGF Machinery gene
  D2E16_RS00885 (D2E16_00915) comGG 145805..146332 (+) 528 WP_192369521.1 competence type IV pilus minor pilin ComGG -
  D2E16_RS00890 (D2E16_00920) comYH 146388..147341 (+) 954 WP_192369522.1 class I SAM-dependent methyltransferase Machinery gene
  D2E16_RS00895 (D2E16_00925) - 147392..148579 (+) 1188 WP_192369523.1 acetate kinase -
  D2E16_RS00900 (D2E16_00930) - 148839..149390 (+) 552 WP_099806699.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10739.67 Da        Isoelectric Point: 9.8358

>NTDB_id=313510 D2E16_RS00875 WP_192369520.1 145113..145406(+) (comYE) [Streptococcus suis strain YSJ17]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQAWELEQQEVLNLAQMAVQIGQDNLALNGVTVQVQRTAD
KIIVFHEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=313510 D2E16_RS00875 WP_192369520.1 145113..145406(+) (comYE) [Streptococcus suis strain YSJ17]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTCTGGTTGCCCTTGCGACCCTAGTGACTAT
TTGCAGCTTGATTTTGTCAGCTGTGGATGCAGGTCGTAGGCGACAGGCTTGGGAATTGGAACAACAGGAGGTTCTCAATC
TAGCACAGATGGCTGTTCAGATCGGGCAAGATAACCTAGCCTTAAACGGTGTTACAGTTCAGGTTCAACGAACGGCGGAT
AAGATCATTGTTTTCCACGAGGGAAAGGAGGTTTTATCGGTTGTTAAAAAATAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

53.608

100

0.536
  comYE Streptococcus mutans UA159

53.608

100

0.536
  comGE/cglE Streptococcus pneumoniae Rx1

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae D39

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae R6

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae TIGR4

40.217

94.845

0.381
  comGE/cglE Streptococcus mitis SK321

39.13

94.845

0.371
  comGE/cglE Streptococcus mitis NCTC 12261

39.13

94.845

0.371

Multiple sequence alignment