Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   D1O36_RS09120 Genome accession   NZ_CP031881
Coordinates   1695347..1695673 (-) Length   108 a.a.
NCBI ID   WP_002946126.1    Uniprot ID   A0A0E2Q1B3
Organism   Streptococcus thermophilus strain ST106     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1690347..1700673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1O36_RS10905 - 1690614..1691033 (-) 420 WP_014727721.1 CPBP family intramembrane glutamic endopeptidase -
  D1O36_RS09085 (D1O36_09110) - 1691282..1691479 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  D1O36_RS09090 (D1O36_09115) - 1691728..1692921 (-) 1194 WP_014608740.1 acetate kinase -
  D1O36_RS09095 (D1O36_09120) comYH 1692977..1693933 (-) 957 WP_011681684.1 class I SAM-dependent methyltransferase Machinery gene
  D1O36_RS09100 (D1O36_09125) comGG 1693978..1694295 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG -
  D1O36_RS09105 (D1O36_09130) comYF 1694273..1694710 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  D1O36_RS09110 (D1O36_09135) comGE 1694694..1694987 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  D1O36_RS09115 (D1O36_09140) comYD 1694959..1695387 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  D1O36_RS09120 (D1O36_09145) comYC 1695347..1695673 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  D1O36_RS09125 (D1O36_09150) comYB 1695670..1696770 (-) 1101 WP_134973504.1 competence type IV pilus assembly protein ComGB Machinery gene
  D1O36_RS09130 (D1O36_09155) - 1696652..1697335 (-) 684 Protein_1715 ATPase, T2SS/T4P/T4SS family -
  D1O36_RS09135 (D1O36_09160) - 1697402..1698754 (-) 1353 WP_134973005.1 IS66-like element short variant transposase -
  D1O36_RS09140 (D1O36_09165) - 1698708..1698914 (-) 207 WP_134973004.1 transposase -
  D1O36_RS09145 (D1O36_09170) tnpB 1698965..1699315 (-) 351 WP_014295152.1 IS66 family insertion sequence element accessory protein TnpB -
  D1O36_RS09150 (D1O36_09175) - 1699296..1699481 (-) 186 WP_134973003.1 hypothetical protein -
  D1O36_RS09155 (D1O36_09180) - 1699566..1699829 (-) 264 Protein_1720 hypothetical protein -
  D1O36_RS09160 (D1O36_09185) - 1699910..1700272 (-) 363 WP_014622006.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 11914.00 Da        Isoelectric Point: 9.9219

>NTDB_id=312359 D1O36_RS09120 WP_002946126.1 1695347..1695673(-) (comYC) [Streptococcus thermophilus strain ST106]
MKLMLKKLNAVKLRAFTLIEMLVVLLIISILLLLFVPNLSKQKDSVKETGNAAVVKVVDSQAELYEMKNNKTASLAALVS
EGQITQKQADSYNDYYAKHGGESRSVAN

Nucleotide


Download         Length: 327 bp        

>NTDB_id=312359 D1O36_RS09120 WP_002946126.1 1695347..1695673(-) (comYC) [Streptococcus thermophilus strain ST106]
ATGAAATTGATGTTAAAAAAATTGAATGCCGTTAAATTACGAGCCTTTACTCTGATTGAAATGCTAGTCGTACTTCTCAT
TATCAGTATTCTCCTTTTGCTCTTTGTTCCTAACTTAAGCAAGCAGAAGGATTCCGTTAAGGAAACTGGAAATGCGGCTG
TAGTCAAGGTCGTGGATTCTCAGGCAGAACTTTATGAAATGAAGAATAACAAGACAGCTAGCTTGGCAGCTCTTGTTTCA
GAAGGTCAAATTACGCAAAAACAGGCAGATTCATACAATGATTACTATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGC
CAATTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(14-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2Q1B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus mutans UA140

69.231

96.296

0.667
  comYC Streptococcus mutans UA159

69.231

96.296

0.667
  comYC Streptococcus gordonii str. Challis substr. CH1

63.81

97.222

0.62
  comGC/cglC Streptococcus mitis SK321

62.264

98.148

0.611
  comGC/cglC Streptococcus mitis NCTC 12261

58.333

100

0.583
  comGC/cglC Streptococcus pneumoniae D39

58.491

98.148

0.574
  comGC/cglC Streptococcus pneumoniae R6

58.491

98.148

0.574
  comGC/cglC Streptococcus pneumoniae Rx1

58.491

98.148

0.574
  comGC/cglC Streptococcus pneumoniae TIGR4

58.491

98.148

0.574
  comGC Lactococcus lactis subsp. cremoris KW2

56.604

98.148

0.556
  comYC Streptococcus suis isolate S10

60.227

81.481

0.491
  comGC Staphylococcus aureus MW2

50

72.222

0.361
  comGC Staphylococcus aureus N315

50

72.222

0.361

Multiple sequence alignment