Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   D1O36_RS09125 Genome accession   NZ_CP031881
Coordinates   1695670..1696770 (-) Length   366 a.a.
NCBI ID   WP_134973504.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST106     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1690670..1701770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1O36_RS09085 (D1O36_09110) - 1691282..1691479 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  D1O36_RS09090 (D1O36_09115) - 1691728..1692921 (-) 1194 WP_014608740.1 acetate kinase -
  D1O36_RS09095 (D1O36_09120) comYH 1692977..1693933 (-) 957 WP_011681684.1 class I SAM-dependent methyltransferase Machinery gene
  D1O36_RS09100 (D1O36_09125) comGG 1693978..1694295 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG -
  D1O36_RS09105 (D1O36_09130) comYF 1694273..1694710 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  D1O36_RS09110 (D1O36_09135) comGE 1694694..1694987 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  D1O36_RS09115 (D1O36_09140) comYD 1694959..1695387 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  D1O36_RS09120 (D1O36_09145) comYC 1695347..1695673 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  D1O36_RS09125 (D1O36_09150) comYB 1695670..1696770 (-) 1101 WP_134973504.1 competence type IV pilus assembly protein ComGB Machinery gene
  D1O36_RS09130 (D1O36_09155) - 1696652..1697335 (-) 684 Protein_1715 ATPase, T2SS/T4P/T4SS family -
  D1O36_RS09135 (D1O36_09160) - 1697402..1698754 (-) 1353 WP_134973005.1 IS66-like element short variant transposase -
  D1O36_RS09140 (D1O36_09165) - 1698708..1698914 (-) 207 WP_134973004.1 transposase -
  D1O36_RS09145 (D1O36_09170) tnpB 1698965..1699315 (-) 351 WP_014295152.1 IS66 family insertion sequence element accessory protein TnpB -
  D1O36_RS09150 (D1O36_09175) - 1699296..1699481 (-) 186 WP_134973003.1 hypothetical protein -
  D1O36_RS09155 (D1O36_09180) - 1699566..1699829 (-) 264 Protein_1720 hypothetical protein -
  D1O36_RS09160 (D1O36_09185) - 1699910..1700272 (-) 363 WP_014622006.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41804.94 Da        Isoelectric Point: 10.0168

>NTDB_id=312360 D1O36_RS09125 WP_134973504.1 1695670..1696770(-) (comYB) [Streptococcus thermophilus strain ST106]
MPEKISKTIRRPTGISSWKVWLNKDVSLRGISKGKKLKISQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKETSLSLM
KESLIRGDRLYQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRQSALVFYRRIAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFCELGADLEEALMLGQSFPERIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=312360 D1O36_RS09125 WP_134973504.1 1695670..1696770(-) (comYB) [Streptococcus thermophilus strain ST106]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGTCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTCATCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAACATCCTTGTCTCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGTATCAGATGTTAGCGTTAGTGGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGAGGTGGCGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACAGTCAGCCCTTGTTTTTT
ATAGGCGAATAGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAAAAGTCTAAACTCTTCTGTGAGCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCAGAACGTATTGCCAGTCATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCCAATGCGAGGTTGGGCTATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(51-164)

Type II secretion system (T2SS), protein F (T2SSF)

(236-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

54.386

93.443

0.508
  comYB Streptococcus mutans UA159

54.386

93.443

0.508
  comYB Streptococcus gordonii str. Challis substr. CH1

51.17

93.443

0.478
  comGB/cglB Streptococcus mitis NCTC 12261

50.453

90.437

0.456
  comGB/cglB Streptococcus mitis SK321

49.697

90.164

0.448
  comGB/cglB Streptococcus pneumoniae Rx1

49.394

90.164

0.445
  comGB/cglB Streptococcus pneumoniae D39

49.394

90.164

0.445
  comGB/cglB Streptococcus pneumoniae R6

49.394

90.164

0.445
  comGB/cglB Streptococcus pneumoniae TIGR4

49.394

90.164

0.445
  comGB Lactococcus lactis subsp. cremoris KW2

45.758

90.164

0.413

Multiple sequence alignment