Detailed information
Bioinformatically predicted
Overview
| Name | comP | Type | Machinery gene |
| Locus tag | D0B54_RS18875 | Genome accession | NZ_CP031704 |
| Coordinates | 4189043..4189465 (+) | Length | 140 a.a. |
| NCBI ID | WP_117293092.1 | Uniprot ID | A0A346N4Y2 |
| Organism | Solimonas sp. K1W22B-7 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 4184043..4194465
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0B54_RS18870 (D0B54_18870) | - | 4185810..4188740 (-) | 2931 | WP_117293090.1 | spermidine synthase | - |
| D0B54_RS18875 (D0B54_18875) | comP | 4189043..4189465 (+) | 423 | WP_117293092.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| D0B54_RS18880 (D0B54_18880) | - | 4189717..4190922 (+) | 1206 | WP_117295362.1 | glycosyltransferase family 2 protein | - |
| D0B54_RS18885 (D0B54_18885) | - | 4190929..4193010 (+) | 2082 | WP_117293095.1 | glycosyltransferase 87 family protein | - |
| D0B54_RS18890 (D0B54_18890) | - | 4193095..4193763 (+) | 669 | WP_205527178.1 | class I SAM-dependent methyltransferase | - |
| D0B54_RS18895 (D0B54_18895) | - | 4193763..4194164 (+) | 402 | WP_117293097.1 | GtrA family protein | - |
Sequence
Protein
Download Length: 140 a.a. Molecular weight: 14270.74 Da Isoelectric Point: 8.4849
>NTDB_id=310636 D0B54_RS18875 WP_117293092.1 4189043..4189465(+) (comP) [Solimonas sp. K1W22B-7]
MNKMQKGFTLIELMIVVAIIGILAAIALPAYQDYTVRGRVSELAVIASGMKATIGENIANNAAIGTGTCLGVATVSTATV
NLASATCADATGVITVTGTAKAKAVVMTYTPTLTAEGVITWKCAVSAATNNKYVPAECRV
MNKMQKGFTLIELMIVVAIIGILAAIALPAYQDYTVRGRVSELAVIASGMKATIGENIANNAAIGTGTCLGVATVSTATV
NLASATCADATGVITVTGTAKAKAVVMTYTPTLTAEGVITWKCAVSAATNNKYVPAECRV
Nucleotide
Download Length: 423 bp
>NTDB_id=310636 D0B54_RS18875 WP_117293092.1 4189043..4189465(+) (comP) [Solimonas sp. K1W22B-7]
ATGAACAAGATGCAGAAAGGCTTCACGCTGATCGAACTGATGATCGTGGTGGCGATCATCGGCATTCTGGCCGCGATTGC
GCTGCCGGCCTACCAGGACTACACCGTCCGTGGCCGCGTTTCCGAACTCGCCGTCATTGCCTCGGGCATGAAGGCCACCA
TCGGTGAGAACATCGCCAACAACGCCGCCATCGGCACCGGCACCTGCCTGGGCGTGGCCACCGTCTCCACGGCCACCGTG
AACCTCGCCTCGGCGACCTGCGCCGACGCCACGGGCGTTATCACCGTCACCGGCACGGCCAAGGCCAAGGCCGTGGTCAT
GACCTACACCCCGACCCTGACCGCCGAAGGCGTGATCACCTGGAAGTGCGCGGTCTCCGCCGCCACCAACAACAAGTACG
TGCCGGCCGAGTGCCGCGTCTAA
ATGAACAAGATGCAGAAAGGCTTCACGCTGATCGAACTGATGATCGTGGTGGCGATCATCGGCATTCTGGCCGCGATTGC
GCTGCCGGCCTACCAGGACTACACCGTCCGTGGCCGCGTTTCCGAACTCGCCGTCATTGCCTCGGGCATGAAGGCCACCA
TCGGTGAGAACATCGCCAACAACGCCGCCATCGGCACCGGCACCTGCCTGGGCGTGGCCACCGTCTCCACGGCCACCGTG
AACCTCGCCTCGGCGACCTGCGCCGACGCCACGGGCGTTATCACCGTCACCGGCACGGCCAAGGCCAAGGCCGTGGTCAT
GACCTACACCCCGACCCTGACCGCCGAAGGCGTGATCACCTGGAAGTGCGCGGTCTCCGCCGCCACCAACAACAAGTACG
TGCCGGCCGAGTGCCGCGTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comP | Acinetobacter baylyi ADP1 |
56.849 |
100 |
0.593 |
| pilA2 | Legionella pneumophila str. Paris |
52.941 |
97.143 |
0.514 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
43.636 |
100 |
0.514 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
52.206 |
97.143 |
0.507 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
38.994 |
100 |
0.443 |
| pilA/pilA1 | Eikenella corrodens VA1 |
40.789 |
100 |
0.443 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
42.857 |
100 |
0.429 |
| pilE | Neisseria gonorrhoeae MS11 |
36.42 |
100 |
0.421 |
| pilA | Pseudomonas aeruginosa PAK |
38.158 |
100 |
0.414 |
| pilA | Acinetobacter baumannii strain A118 |
39.437 |
100 |
0.4 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
37.857 |
100 |
0.379 |