Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DZL40_RS08735 | Genome accession | NZ_CP031639 |
| Coordinates | 1728258..1728674 (+) | Length | 138 a.a. |
| NCBI ID | WP_000609566.1 | Uniprot ID | - |
| Organism | Streptococcus pyogenes strain MGAS7914 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1712318..1750087 | 1728258..1728674 | within | 0 |
Gene organization within MGE regions
Location: 1712318..1750087
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DZL40_RS08610 (DZL40_08600) | groL | 1712318..1713949 (-) | 1632 | WP_129846776.1 | chaperonin GroEL | - |
| DZL40_RS08615 (DZL40_08605) | groES | 1713985..1714275 (-) | 291 | WP_002991292.1 | co-chaperone GroES | - |
| DZL40_RS08620 (DZL40_08610) | clpC | 1714453..1716897 (-) | 2445 | WP_011018294.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| DZL40_RS08625 (DZL40_08615) | - | 1716897..1717358 (-) | 462 | WP_002982312.1 | CtsR family transcriptional regulator | - |
| DZL40_RS08630 (DZL40_08620) | - | 1717554..1717757 (-) | 204 | WP_002991299.1 | cold-shock protein | - |
| DZL40_RS08635 (DZL40_08625) | - | 1718347..1719417 (-) | 1071 | WP_000179397.1 | site-specific integrase | - |
| DZL40_RS08640 (DZL40_08630) | - | 1719539..1719943 (-) | 405 | WP_001173134.1 | DUF4429 domain-containing protein | - |
| DZL40_RS08645 (DZL40_08635) | - | 1719996..1720376 (-) | 381 | WP_000762727.1 | ImmA/IrrE family metallo-endopeptidase | - |
| DZL40_RS08650 (DZL40_08640) | - | 1720383..1720745 (-) | 363 | WP_000114553.1 | helix-turn-helix transcriptional regulator | - |
| DZL40_RS08660 (DZL40_08650) | - | 1721031..1721195 (+) | 165 | WP_000511144.1 | hypothetical protein | - |
| DZL40_RS08665 (DZL40_08655) | - | 1721178..1721648 (-) | 471 | WP_001052630.1 | hypothetical protein | - |
| DZL40_RS08670 (DZL40_08660) | - | 1721709..1721918 (+) | 210 | WP_000082755.1 | helix-turn-helix transcriptional regulator | - |
| DZL40_RS08675 (DZL40_08665) | - | 1721921..1722631 (+) | 711 | WP_001002368.1 | ORF6C domain-containing protein | - |
| DZL40_RS08680 (DZL40_08670) | - | 1722691..1722975 (+) | 285 | WP_000998973.1 | hypothetical protein | - |
| DZL40_RS08685 (DZL40_08675) | - | 1722992..1723207 (+) | 216 | WP_001061697.1 | hypothetical protein | - |
| DZL40_RS08690 (DZL40_08680) | dnaB | 1723216..1724547 (+) | 1332 | WP_000343908.1 | replicative DNA helicase | - |
| DZL40_RS08695 (DZL40_08685) | - | 1724547..1725152 (+) | 606 | WP_000988139.1 | hypothetical protein | - |
| DZL40_RS08700 (DZL40_08690) | - | 1725130..1725876 (+) | 747 | WP_000079054.1 | conserved phage C-terminal domain-containing protein | - |
| DZL40_RS08705 (DZL40_08695) | - | 1725877..1726698 (+) | 822 | WP_001067867.1 | ATP-binding protein | - |
| DZL40_RS08710 (DZL40_08700) | - | 1726698..1726760 (+) | 63 | Protein_1616 | DNA cytosine methyltransferase | - |
| DZL40_RS09765 | - | 1726741..1726896 (+) | 156 | WP_153204894.1 | hypothetical protein | - |
| DZL40_RS08715 (DZL40_08705) | - | 1726889..1727380 (+) | 492 | WP_000169322.1 | MazG-like family protein | - |
| DZL40_RS08720 (DZL40_08710) | - | 1727380..1727709 (+) | 330 | WP_000793494.1 | DUF1372 family protein | - |
| DZL40_RS09710 (DZL40_08715) | - | 1727727..1728065 (+) | 339 | WP_340639386.1 | DUF3310 domain-containing protein | - |
| DZL40_RS08730 (DZL40_08720) | - | 1728062..1728268 (+) | 207 | WP_000748199.1 | hypothetical protein | - |
| DZL40_RS08735 (DZL40_08725) | ssb | 1728258..1728674 (+) | 417 | WP_000609566.1 | single-stranded DNA-binding protein | Machinery gene |
| DZL40_RS08740 (DZL40_08730) | - | 1728684..1728944 (+) | 261 | WP_001008140.1 | hypothetical protein | - |
| DZL40_RS08745 (DZL40_08735) | - | 1728941..1729288 (+) | 348 | WP_000776714.1 | helix-turn-helix transcriptional regulator | - |
| DZL40_RS08750 (DZL40_08740) | - | 1729285..1729749 (+) | 465 | WP_000163169.1 | hypothetical protein | - |
| DZL40_RS08755 (DZL40_08745) | - | 1729859..1730401 (+) | 543 | WP_001028147.1 | site-specific integrase | - |
| DZL40_RS08760 (DZL40_08755) | - | 1730691..1730978 (+) | 288 | WP_000651009.1 | hypothetical protein | - |
| DZL40_RS08765 (DZL40_08760) | - | 1731101..1731337 (+) | 237 | WP_223846017.1 | HNH endonuclease | - |
| DZL40_RS08770 (DZL40_08765) | - | 1731425..1731910 (+) | 486 | WP_000601035.1 | hypothetical protein | - |
| DZL40_RS08775 (DZL40_08770) | - | 1731903..1733615 (+) | 1713 | WP_000230004.1 | terminase TerL endonuclease subunit | - |
| DZL40_RS08780 (DZL40_08775) | - | 1733624..1734766 (+) | 1143 | WP_001067328.1 | phage portal protein | - |
| DZL40_RS08785 (DZL40_08780) | - | 1734816..1735358 (+) | 543 | WP_000413200.1 | HK97 family phage prohead protease | - |
| DZL40_RS08790 (DZL40_08785) | - | 1735369..1736631 (+) | 1263 | WP_000749070.1 | phage major capsid protein | - |
| DZL40_RS08795 (DZL40_08790) | - | 1736652..1736987 (+) | 336 | WP_000153862.1 | hypothetical protein | - |
| DZL40_RS08800 (DZL40_08795) | - | 1736984..1737289 (+) | 306 | WP_000842789.1 | head-tail adaptor protein | - |
| DZL40_RS08805 (DZL40_08800) | - | 1737289..1737636 (+) | 348 | WP_001074486.1 | hypothetical protein | - |
| DZL40_RS08810 (DZL40_08805) | - | 1737623..1737967 (+) | 345 | WP_000508738.1 | hypothetical protein | - |
| DZL40_RS08815 (DZL40_08810) | - | 1737982..1738665 (+) | 684 | WP_000222195.1 | hypothetical protein | - |
| DZL40_RS09850 | - | 1738665..1738856 (+) | 192 | WP_242493980.1 | hypothetical protein | - |
| DZL40_RS09855 | - | 1738898..1739140 (+) | 243 | WP_242493981.1 | hypothetical protein | - |
| DZL40_RS09900 (DZL40_08820) | - | 1739179..1739307 (+) | 129 | WP_011058372.1 | hypothetical protein | - |
| DZL40_RS08830 (DZL40_08825) | - | 1739326..1742061 (+) | 2736 | WP_000140779.1 | phage tail tape measure protein | - |
| DZL40_RS08835 (DZL40_08830) | - | 1742058..1742780 (+) | 723 | WP_000161557.1 | hypothetical protein | - |
| DZL40_RS08840 (DZL40_08835) | - | 1742781..1746455 (+) | 3675 | WP_001895725.1 | phage tail spike protein | - |
| DZL40_RS08845 (DZL40_08840) | - | 1746472..1746702 (+) | 231 | WP_001071121.1 | hypothetical protein | - |
| DZL40_RS08850 (DZL40_08845) | - | 1746705..1747043 (+) | 339 | WP_000213866.1 | hypothetical protein | - |
| DZL40_RS08855 (DZL40_08850) | - | 1747078..1747488 (+) | 411 | WP_001135353.1 | hypothetical protein | - |
| DZL40_RS08860 (DZL40_08855) | - | 1747491..1747820 (+) | 330 | WP_000192161.1 | phage holin | - |
| DZL40_RS08865 (DZL40_08860) | - | 1747824..1749230 (+) | 1407 | WP_000405192.1 | peptidoglycan amidohydrolase family protein | - |
| DZL40_RS08870 (DZL40_08865) | - | 1749437..1749622 (+) | 186 | WP_000139836.1 | type II toxin-antitoxin system HicA family toxin | - |
| DZL40_RS08875 (DZL40_08870) | - | 1749683..1750087 (+) | 405 | WP_000878126.1 | type II toxin-antitoxin system HicB family antitoxin | - |
Sequence
Protein
Download Length: 138 a.a. Molecular weight: 15696.58 Da Isoelectric Point: 5.1513
>NTDB_id=309183 DZL40_RS08735 WP_000609566.1 1728258..1728674(+) (ssb) [Streptococcus pyogenes strain MGAS7914]
MINNVVLIGRLTRDVELRYTPSNIANATFNLAVNRNFKNAAGDREADFINCVMWRQQAENLANWTKKGMLIGITGRIQTR
SYENQQGQRIYVTEVVADSFQILEKRDNSTNQASMHDQLPPSFGNSQPMDISDDDLPF
MINNVVLIGRLTRDVELRYTPSNIANATFNLAVNRNFKNAAGDREADFINCVMWRQQAENLANWTKKGMLIGITGRIQTR
SYENQQGQRIYVTEVVADSFQILEKRDNSTNQASMHDQLPPSFGNSQPMDISDDDLPF
Nucleotide
Download Length: 417 bp
>NTDB_id=309183 DZL40_RS08735 WP_000609566.1 1728258..1728674(+) (ssb) [Streptococcus pyogenes strain MGAS7914]
ATGATCAATAATGTTGTACTTATTGGCCGCTTGACAAGAGATGTTGAGCTACGTTACACGCCGTCAAACATCGCAAACGC
TACTTTTAACCTAGCAGTCAATCGAAATTTCAAGAATGCTGCTGGTGATCGTGAAGCTGATTTCATCAACTGTGTGATGT
GGCGACAACAAGCTGAAAACTTGGCCAATTGGACGAAAAAAGGAATGCTGATTGGTATTACTGGACGAATCCAGACAAGA
AGCTACGAAAATCAGCAAGGTCAGCGTATCTATGTGACTGAGGTTGTTGCTGACAGCTTCCAGATTCTTGAAAAGCGTGA
TAATTCAACGAACCAGGCAAGCATGCATGACCAATTGCCACCATCATTTGGAAATAGTCAGCCTATGGATATTTCAGATG
ATGATCTACCGTTTTAG
ATGATCAATAATGTTGTACTTATTGGCCGCTTGACAAGAGATGTTGAGCTACGTTACACGCCGTCAAACATCGCAAACGC
TACTTTTAACCTAGCAGTCAATCGAAATTTCAAGAATGCTGCTGGTGATCGTGAAGCTGATTTCATCAACTGTGTGATGT
GGCGACAACAAGCTGAAAACTTGGCCAATTGGACGAAAAAAGGAATGCTGATTGGTATTACTGGACGAATCCAGACAAGA
AGCTACGAAAATCAGCAAGGTCAGCGTATCTATGTGACTGAGGTTGTTGCTGACAGCTTCCAGATTCTTGAAAAGCGTGA
TAATTCAACGAACCAGGCAAGCATGCATGACCAATTGCCACCATCATTTGGAAATAGTCAGCCTATGGATATTTCAGATG
ATGATCTACCGTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.118 |
100 |
0.667 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.575 |
100 |
0.638 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
41.259 |
100 |
0.428 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
54.717 |
76.812 |
0.42 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40.559 |
100 |
0.42 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
40.559 |
100 |
0.42 |
| ssbB/cilA | Streptococcus mitis SK321 |
40.559 |
100 |
0.42 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
40.559 |
100 |
0.42 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
40.559 |
100 |
0.42 |
| ssbA | Streptococcus mutans UA159 |
39.161 |
100 |
0.406 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
50.943 |
76.812 |
0.391 |