Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | L3107_RS04395 | Genome accession | NZ_CP031538 |
| Coordinates | 854487..854912 (+) | Length | 141 a.a. |
| NCBI ID | WP_021166254.1 | Uniprot ID | - |
| Organism | Lactococcus cremoris strain 3107 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 849487..859912
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L3107_RS04350 (L3107_0830) | - | 849504..850082 (-) | 579 | WP_021166263.1 | SHOCT domain-containing protein | - |
| L3107_RS04355 (L3107_0831) | - | 850166..851002 (-) | 837 | WP_031286732.1 | S24 family peptidase | - |
| L3107_RS04360 (L3107_0832) | - | 851219..851398 (+) | 180 | WP_031286731.1 | putative transcriptional regulator | - |
| L3107_RS04365 (L3107_0833) | - | 851419..851661 (+) | 243 | WP_015966780.1 | hypothetical protein | - |
| L3107_RS04370 (L3107_0834) | - | 851674..852498 (+) | 825 | WP_021166261.1 | phage antirepressor | - |
| L3107_RS04375 (L3107_0835) | - | 852511..852801 (+) | 291 | WP_021166260.1 | hypothetical protein | - |
| L3107_RS04380 (L3107_0836) | - | 852868..853104 (+) | 237 | WP_021166259.1 | DUF1408 domain-containing protein | - |
| L3107_RS04385 (L3107_0837) | - | 853209..853727 (+) | 519 | WP_021166258.1 | host-nuclease inhibitor Gam family protein | - |
| L3107_RS04390 (L3107_0838) | - | 853736..854494 (+) | 759 | WP_064305187.1 | Rad52/Rad22 family DNA repair protein | - |
| L3107_RS04395 (L3107_0839) | ssb | 854487..854912 (+) | 426 | WP_021166254.1 | single-stranded DNA-binding protein | Machinery gene |
| L3107_RS04400 (L3107_0840) | - | 855041..855823 (+) | 783 | WP_015966802.1 | phage replisome organiser protein | - |
| L3107_RS04405 (L3107_0841) | - | 855823..856548 (+) | 726 | WP_021166253.1 | hypothetical protein | - |
| L3107_RS04410 (L3107_0842) | - | 856545..857303 (+) | 759 | WP_003132944.1 | site-specific DNA-methyltransferase | - |
| L3107_RS04415 (L3107_0843) | - | 857293..857682 (+) | 390 | WP_021166252.1 | RusA family crossover junction endodeoxyribonuclease | - |
| L3107_RS04420 (L3107_0844) | - | 857686..857880 (+) | 195 | WP_021166251.1 | hypothetical protein | - |
| L3107_RS04425 (L3107_0845) | - | 857873..858112 (+) | 240 | WP_031286728.1 | DUF1031 family protein | - |
| L3107_RS04430 (L3107_0846) | - | 858224..858403 (+) | 180 | WP_021166249.1 | DUF1497 domain-containing protein | - |
| L3107_RS04435 (L3107_0847) | - | 858393..858962 (+) | 570 | WP_021166248.1 | DUF658 family protein | - |
| L3107_RS04440 (L3107_0848) | - | 858973..859233 (+) | 261 | WP_011676533.1 | hypothetical protein | - |
| L3107_RS04445 (L3107_0849) | - | 859234..859440 (+) | 207 | WP_021166247.1 | DUF1125 domain-containing protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15758.51 Da Isoelectric Point: 5.1972
>NTDB_id=307348 L3107_RS04395 WP_021166254.1 854487..854912(+) (ssb) [Lactococcus cremoris strain 3107]
MINNVTLVGRITKEPELRYTPQNKAVAAFTLAVNRAFKNANGEREADFINCIIWGKSAENLANWTHKGQLIGVTGSIQTR
NYENQQGQRIYVTEVIANNFQVLEKSNQANNERVGNPASKPQNNDSFGSDLMEISDDDLPF
MINNVTLVGRITKEPELRYTPQNKAVAAFTLAVNRAFKNANGEREADFINCIIWGKSAENLANWTHKGQLIGVTGSIQTR
NYENQQGQRIYVTEVIANNFQVLEKSNQANNERVGNPASKPQNNDSFGSDLMEISDDDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=307348 L3107_RS04395 WP_021166254.1 854487..854912(+) (ssb) [Lactococcus cremoris strain 3107]
ATGATTAACAATGTCACTCTAGTAGGGCGAATCACTAAAGAACCTGAACTTAGATATACACCACAAAATAAAGCAGTTGC
CGCTTTTACTCTTGCAGTTAATCGAGCATTTAAAAATGCTAATGGAGAAAGAGAAGCTGACTTTATCAATTGTATTATTT
GGGGTAAATCAGCCGAAAACTTGGCCAATTGGACTCATAAAGGTCAATTAATTGGAGTTACTGGTAGTATTCAAACTCGA
AACTATGAGAACCAACAAGGGCAACGAATTTATGTAACAGAAGTCATTGCAAACAATTTCCAAGTACTTGAAAAAAGTAA
CCAAGCAAATAATGAACGAGTTGGTAATCCAGCTTCAAAACCACAAAATAATGATTCTTTTGGAAGTGATCTAATGGAAA
TTTCAGATGATGACCTACCATTCTAA
ATGATTAACAATGTCACTCTAGTAGGGCGAATCACTAAAGAACCTGAACTTAGATATACACCACAAAATAAAGCAGTTGC
CGCTTTTACTCTTGCAGTTAATCGAGCATTTAAAAATGCTAATGGAGAAAGAGAAGCTGACTTTATCAATTGTATTATTT
GGGGTAAATCAGCCGAAAACTTGGCCAATTGGACTCATAAAGGTCAATTAATTGGAGTTACTGGTAGTATTCAAACTCGA
AACTATGAGAACCAACAAGGGCAACGAATTTATGTAACAGAAGTCATTGCAAACAATTTCCAAGTACTTGAAAAAAGTAA
CCAAGCAAATAATGAACGAGTTGGTAATCCAGCTTCAAAACCACAAAATAATGATTCTTTTGGAAGTGATCTAATGGAAA
TTTCAGATGATGACCTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.765 |
100 |
0.624 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.581 |
100 |
0.617 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
45.39 |
100 |
0.454 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
43.357 |
100 |
0.44 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
43.357 |
100 |
0.44 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
42.657 |
100 |
0.433 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
42.657 |
100 |
0.433 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
42.657 |
100 |
0.433 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.657 |
100 |
0.433 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.692 |
73.759 |
0.426 |
| ssbA | Streptococcus mutans UA159 |
40.426 |
100 |
0.404 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
50.485 |
73.05 |
0.369 |