Detailed information NTG0305296

Bioinformatically predicted

Overview

• Name: comGC
• Type: Machinery gene
• Locus tag: DWB96_RS06580
• Genome accession: NZ_CP031271
• Coordinates: 1365675..1365992 (+)
• Length: 105 a.a.
• NCBI ID: WP_002443081.1
• Uniprot ID: -
• Organism: Staphylococcus caprae strain 26D
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1360675..1370992

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DWB96_RS06550 (DWB96_06570)	-	1361457..1361660 (+)	204	WP_002443096.1	YqgQ family protein	-
DWB96_RS06555 (DWB96_06575)	-	1361657..1362643 (+)	987	WP_002443095.1	ROK family glucokinase	-
DWB96_RS06560 (DWB96_06580)	-	1362643..1362966 (+)	324	WP_002443093.1	MTH1187 family thiamine-binding protein	-
DWB96_RS06565 (DWB96_06585)	-	1362970..1363593 (+)	624	WP_002443090.1	MBL fold metallo-hydrolase	-
DWB96_RS06570 (DWB96_06590)	comGA	1363648..1364622 (+)	975	WP_002443088.1	competence type IV pilus ATPase ComGA	Machinery gene
DWB96_RS06575 (DWB96_06595)	comGB	1364594..1365661 (+)	1068	WP_049402080.1	competence type IV pilus assembly protein ComGB	Machinery gene
DWB96_RS06580 (DWB96_06600)	comGC	1365675..1365992 (+)	318	WP_002443081.1	competence type IV pilus major pilin ComGC	Machinery gene
DWB96_RS06585 (DWB96_06605)	comGD	1366021..1366419 (+)	399	WP_002443080.1	competence type IV pilus minor pilin ComGD	-
DWB96_RS06590 (DWB96_06610)	-	1366406..1366699 (+)	294	WP_002443078.1	hypothetical protein	-
DWB96_RS06595 (DWB96_06615)	-	1366686..1367114 (+)	429	WP_232018998.1	competence type IV pilus minor pilin ComGF	-
DWB96_RS06605 (DWB96_06625)	-	1367283..1367792 (+)	510	WP_002443074.1	shikimate kinase	-
DWB96_RS06610 (DWB96_06630)	gcvT	1368018..1369109 (+)	1092	WP_002443072.1	glycine cleavage system aminomethyltransferase GcvT	-
DWB96_RS06615 (DWB96_06635)	gcvPA	1369127..1370473 (+)	1347	WP_002443070.1	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	-

Sequence

Protein

• Length: 105 a.a.
• Molecular weight: 11534.65 Da
• Isoelectric Point: 10.0301

>NTDB_id=305296 DWB96_RS06580 WP_002443081.1 1365675..1365992(+) (comGC) [Staphylococcus caprae strain 26D]
MNLLKKFKKSKAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCDAQVKMVNSQIEAYALKHNRNPSNIQELISDG
FIKEGQKNCKSGQTISIANGEAVAN

Nucleotide

• Length: 318 bp

>NTDB_id=305296 DWB96_RS06580 WP_002443081.1 1365675..1365992(+) (comGC) [Staphylococcus caprae strain 26D]
ATGAACTTATTAAAAAAATTTAAAAAATCCAAAGCTTTTACACTTATTGAAATGTTACTAGTACTTTTAATTATCAGTTT
ATTACTGATTTTAATAATCCCTAATATTGCTAAGCAAACAGCACATATACAATCTACTGGTTGCGATGCACAAGTTAAAA
TGGTAAATAGTCAAATTGAAGCATATGCATTGAAACATAATCGTAACCCGAGTAACATACAAGAATTAATTTCCGACGGT
TTCATTAAAGAAGGACAGAAAAATTGCAAATCAGGGCAAACAATTAGTATAGCTAACGGTGAAGCAGTTGCGAATTAG

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (8-32)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGC	Staphylococcus aureus N315	84.466	98.095	0.829
comGC	Staphylococcus aureus MW2	84.466	98.095	0.829
comGC/cglC	Streptococcus pneumoniae R6	46.078	97.143	0.448
comGC/cglC	Streptococcus pneumoniae TIGR4	46.078	97.143	0.448
comGC/cglC	Streptococcus pneumoniae Rx1	46.078	97.143	0.448
comGC/cglC	Streptococcus pneumoniae D39	46.078	97.143	0.448
comGC/cglC	Streptococcus mitis NCTC 12261	51.163	81.905	0.419
comGC/cglC	Streptococcus mitis SK321	51.163	81.905	0.419
comGC	Lactococcus lactis subsp. cremoris KW2	51.899	75.238	0.39
comYC	Streptococcus gordonii str. Challis substr. CH1	46.067	84.762	0.39
comYC	Streptococcus mutans UA159	45.455	83.81	0.381
comYC	Streptococcus mutans UA140	45.455	83.81	0.381
comYC	Streptococcus suis isolate S10	48.718	74.286	0.362
comGC	Bacillus subtilis subsp. subtilis str. 168	41.304	87.619	0.362