Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | DWB96_RS06575 | Genome accession | NZ_CP031271 |
| Coordinates | 1364594..1365661 (+) | Length | 355 a.a. |
| NCBI ID | WP_049402080.1 | Uniprot ID | - |
| Organism | Staphylococcus caprae strain 26D | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1359594..1370661
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DWB96_RS06545 (DWB96_06565) | - | 1360013..1361476 (+) | 1464 | WP_044466727.1 | rhomboid family protein | - |
| DWB96_RS06550 (DWB96_06570) | - | 1361457..1361660 (+) | 204 | WP_002443096.1 | YqgQ family protein | - |
| DWB96_RS06555 (DWB96_06575) | - | 1361657..1362643 (+) | 987 | WP_002443095.1 | ROK family glucokinase | - |
| DWB96_RS06560 (DWB96_06580) | - | 1362643..1362966 (+) | 324 | WP_002443093.1 | MTH1187 family thiamine-binding protein | - |
| DWB96_RS06565 (DWB96_06585) | - | 1362970..1363593 (+) | 624 | WP_002443090.1 | MBL fold metallo-hydrolase | - |
| DWB96_RS06570 (DWB96_06590) | comGA | 1363648..1364622 (+) | 975 | WP_002443088.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DWB96_RS06575 (DWB96_06595) | comGB | 1364594..1365661 (+) | 1068 | WP_049402080.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| DWB96_RS06580 (DWB96_06600) | comGC | 1365675..1365992 (+) | 318 | WP_002443081.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DWB96_RS06585 (DWB96_06605) | comGD | 1366021..1366419 (+) | 399 | WP_002443080.1 | competence type IV pilus minor pilin ComGD | - |
| DWB96_RS06590 (DWB96_06610) | - | 1366406..1366699 (+) | 294 | WP_002443078.1 | hypothetical protein | - |
| DWB96_RS06595 (DWB96_06615) | - | 1366686..1367114 (+) | 429 | WP_232018998.1 | competence type IV pilus minor pilin ComGF | - |
| DWB96_RS06605 (DWB96_06625) | - | 1367283..1367792 (+) | 510 | WP_002443074.1 | shikimate kinase | - |
| DWB96_RS06610 (DWB96_06630) | gcvT | 1368018..1369109 (+) | 1092 | WP_002443072.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| DWB96_RS06615 (DWB96_06635) | gcvPA | 1369127..1370473 (+) | 1347 | WP_002443070.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 41864.99 Da Isoelectric Point: 9.8952
>NTDB_id=305295 DWB96_RS06575 WP_049402080.1 1364594..1365661(+) (comGB) [Staphylococcus caprae strain 26D]
MKRLSTNIFKFKKRKNLTEPQLIELLQRLNQLLQNGFTLFESFSFLNLHFPYKNKTIGQNIIESLQTGATCYEILKIIGY
PEIILNQIKFAEQYGKLENVITDSIDYMKRNYKAKKALIKTIQYPIVLISIFLVMLIVLNMTVIPQFQQLYSTMNVELST
FQNILTFIITKLPNFLFLFLMLSMIIYFSFITLLNKLPIDKKIDYILKIPILNSYYKIYRTYQFSNELSLFYKNGVSLQS
IVFIYQNEQNNEFFKYLGSQLLEGADNGRTLPLILKNLKCFKNDLIKFIEQGEKSGKLDIELKLYSQMLLQHFEDKVIKQ
TKLIQPVIFFILGLFIVSLYLVIMLPMFELMQTIK
MKRLSTNIFKFKKRKNLTEPQLIELLQRLNQLLQNGFTLFESFSFLNLHFPYKNKTIGQNIIESLQTGATCYEILKIIGY
PEIILNQIKFAEQYGKLENVITDSIDYMKRNYKAKKALIKTIQYPIVLISIFLVMLIVLNMTVIPQFQQLYSTMNVELST
FQNILTFIITKLPNFLFLFLMLSMIIYFSFITLLNKLPIDKKIDYILKIPILNSYYKIYRTYQFSNELSLFYKNGVSLQS
IVFIYQNEQNNEFFKYLGSQLLEGADNGRTLPLILKNLKCFKNDLIKFIEQGEKSGKLDIELKLYSQMLLQHFEDKVIKQ
TKLIQPVIFFILGLFIVSLYLVIMLPMFELMQTIK
Nucleotide
Download Length: 1068 bp
>NTDB_id=305295 DWB96_RS06575 WP_049402080.1 1364594..1365661(+) (comGB) [Staphylococcus caprae strain 26D]
GTGAAGAGATTGTCGACAAATATATTTAAATTTAAAAAGCGAAAAAATCTTACCGAGCCTCAGTTAATTGAATTACTTCA
ACGACTTAATCAATTATTACAAAATGGCTTTACTTTATTTGAAAGTTTCAGCTTTCTAAATTTACACTTCCCTTATAAAA
ATAAAACGATAGGTCAAAATATCATTGAATCATTACAAACAGGCGCAACATGTTATGAAATTTTAAAAATAATAGGCTAT
CCTGAAATTATTCTTAATCAAATTAAATTCGCAGAACAATATGGAAAACTTGAGAATGTGATAACAGATTCAATTGATTA
TATGAAGAGGAATTATAAAGCTAAAAAAGCACTCATTAAAACCATACAATATCCCATAGTATTAATTAGCATCTTCCTAG
TGATGCTTATCGTTTTGAATATGACAGTTATTCCACAGTTCCAACAATTATATTCTACGATGAATGTAGAATTATCTACC
TTTCAAAATATACTTACTTTTATCATAACGAAACTTCCAAATTTTTTATTTCTATTTCTAATGTTATCAATGATCATTTA
CTTTTCATTCATCACACTTTTAAATAAATTACCCATTGATAAAAAAATAGATTACATCCTCAAAATTCCAATTTTAAACT
CTTATTACAAAATATATAGAACTTATCAATTTTCCAATGAACTTTCATTATTCTATAAAAACGGTGTTAGTCTTCAAAGC
ATCGTCTTTATCTATCAAAATGAACAAAACAACGAATTCTTTAAATACTTGGGAAGTCAATTATTAGAAGGAGCTGATAA
CGGAAGAACACTTCCGCTTATATTAAAAAATTTAAAGTGCTTTAAAAATGATTTAATAAAATTTATCGAGCAAGGAGAAA
AAAGTGGAAAGTTAGATATAGAGCTTAAATTATATAGTCAAATGCTATTGCAACATTTTGAAGATAAAGTCATAAAACAA
ACAAAATTGATCCAACCAGTTATTTTCTTTATTTTAGGCTTGTTTATTGTGTCTTTATATCTCGTCATCATGCTACCTAT
GTTTGAACTTATGCAAACGATTAAGTAA
GTGAAGAGATTGTCGACAAATATATTTAAATTTAAAAAGCGAAAAAATCTTACCGAGCCTCAGTTAATTGAATTACTTCA
ACGACTTAATCAATTATTACAAAATGGCTTTACTTTATTTGAAAGTTTCAGCTTTCTAAATTTACACTTCCCTTATAAAA
ATAAAACGATAGGTCAAAATATCATTGAATCATTACAAACAGGCGCAACATGTTATGAAATTTTAAAAATAATAGGCTAT
CCTGAAATTATTCTTAATCAAATTAAATTCGCAGAACAATATGGAAAACTTGAGAATGTGATAACAGATTCAATTGATTA
TATGAAGAGGAATTATAAAGCTAAAAAAGCACTCATTAAAACCATACAATATCCCATAGTATTAATTAGCATCTTCCTAG
TGATGCTTATCGTTTTGAATATGACAGTTATTCCACAGTTCCAACAATTATATTCTACGATGAATGTAGAATTATCTACC
TTTCAAAATATACTTACTTTTATCATAACGAAACTTCCAAATTTTTTATTTCTATTTCTAATGTTATCAATGATCATTTA
CTTTTCATTCATCACACTTTTAAATAAATTACCCATTGATAAAAAAATAGATTACATCCTCAAAATTCCAATTTTAAACT
CTTATTACAAAATATATAGAACTTATCAATTTTCCAATGAACTTTCATTATTCTATAAAAACGGTGTTAGTCTTCAAAGC
ATCGTCTTTATCTATCAAAATGAACAAAACAACGAATTCTTTAAATACTTGGGAAGTCAATTATTAGAAGGAGCTGATAA
CGGAAGAACACTTCCGCTTATATTAAAAAATTTAAAGTGCTTTAAAAATGATTTAATAAAATTTATCGAGCAAGGAGAAA
AAAGTGGAAAGTTAGATATAGAGCTTAAATTATATAGTCAAATGCTATTGCAACATTTTGAAGATAAAGTCATAAAACAA
ACAAAATTGATCCAACCAGTTATTTTCTTTATTTTAGGCTTGTTTATTGTGTCTTTATATCTCGTCATCATGCTACCTAT
GTTTGAACTTATGCAAACGATTAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Staphylococcus aureus MW2 |
49.157 |
100 |
0.493 |
| comGB | Staphylococcus aureus N315 |
49.157 |
100 |
0.493 |