Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   DV384_RS06020 Genome accession   NZ_CP031241
Coordinates   1228953..1229474 (-) Length   173 a.a.
NCBI ID   WP_005662592.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M17648     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1223953..1234474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV384_RS05990 - 1224337..1224927 (-) 591 WP_005652133.1 YjaG family protein -
  DV384_RS05995 nudC 1224963..1225757 (-) 795 WP_114890070.1 NAD(+) diphosphatase -
  DV384_RS06000 nfuA 1225824..1226420 (-) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -
  DV384_RS06005 - 1226496..1227182 (-) 687 WP_042594791.1 ComF family protein -
  DV384_RS06010 comE 1227195..1228532 (-) 1338 WP_114934598.1 type IV pilus secretin PilQ family protein Machinery gene
  DV384_RS06015 - 1228546..1228956 (-) 411 Protein_1141 pilus assembly protein PilP -
  DV384_RS06020 comC 1228953..1229474 (-) 522 WP_005662592.1 competence protein ComC Machinery gene
  DV384_RS06025 comB 1229471..1229977 (-) 507 WP_005656467.1 competence protein ComB Machinery gene
  DV384_RS06030 comA 1229978..1230775 (-) 798 WP_105886343.1 competence protein ComA Machinery gene
  DV384_RS06035 - 1230874..1233468 (+) 2595 WP_114934599.1 penicillin-binding protein 1A -
  DV384_RS06040 - 1233545..1234390 (+) 846 WP_114934600.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19961.15 Da        Isoelectric Point: 10.1286

>NTDB_id=304501 DV384_RS06020 WP_005662592.1 1228953..1229474(-) (comC) [Haemophilus influenzae strain M17648]
MKAFFNDPLTPFGKWLSQPFYVHGLTFLLLLSAVIFRPVLDYIEGSSRFHEIENELAVKRSELLHQQKILTSLQQQSESR
KLSPELAAQIIPLNKQIQRLAARNGLSQHLRWEMGQKPILHLQLTGHFEKTKTFLTALLANSSQLSVSRLQFIKPEDSPL
QTEIIFQLDRETK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=304501 DV384_RS06020 WP_005662592.1 1228953..1229474(-) (comC) [Haemophilus influenzae strain M17648]
ATGAAAGCTTTTTTTAACGATCCTTTGACTCCTTTTGGAAAATGGCTAAGTCAGCCTTTTTATGTGCACGGTTTAACCTT
TTTATTGCTATTAAGTGCGGTGATTTTTCGCCCCGTTTTAGATTATATCGAGGGGAGTTCACGTTTCCATGAAATTGAAA
ATGAGTTAGCGGTGAAACGTTCAGAATTGTTGCATCAACAGAAAATTTTAACTTCTTTACAGCAGCAATCGGAAAGTCGA
AAACTTTCTCCAGAACTGGCTGCACAAATTATTCCTTTGAATAAACAAATTCAACGTTTAGCTGCACGCAACGGTTTATC
TCAGCATTTACGTTGGGAAATGGGGCAAAAGCCTATTTTGCATTTACAGCTTACAGGTCATTTTGAGAAAACGAAGACAT
TTTTAACCGCACTTTTGGCTAATTCGTCACAGCTTTCAGTGAGTCGCTTGCAGTTTATCAAACCCGAAGACAGCCCATTG
CAAACCGAGATTATTTTTCAGTTAGATAGGGAGACAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Haemophilus influenzae 86-028NP

98.266

100

0.983
  comC Haemophilus influenzae Rd KW20

97.11

100

0.971

Multiple sequence alignment