Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   DV384_RS06025 Genome accession   NZ_CP031241
Coordinates   1229471..1229977 (-) Length   168 a.a.
NCBI ID   WP_005656467.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M17648     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1224471..1234977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV384_RS05995 nudC 1224963..1225757 (-) 795 WP_114890070.1 NAD(+) diphosphatase -
  DV384_RS06000 nfuA 1225824..1226420 (-) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -
  DV384_RS06005 - 1226496..1227182 (-) 687 WP_042594791.1 ComF family protein -
  DV384_RS06010 comE 1227195..1228532 (-) 1338 WP_114934598.1 type IV pilus secretin PilQ family protein Machinery gene
  DV384_RS06015 - 1228546..1228956 (-) 411 Protein_1141 pilus assembly protein PilP -
  DV384_RS06020 comC 1228953..1229474 (-) 522 WP_005662592.1 competence protein ComC Machinery gene
  DV384_RS06025 comB 1229471..1229977 (-) 507 WP_005656467.1 competence protein ComB Machinery gene
  DV384_RS06030 comA 1229978..1230775 (-) 798 WP_105886343.1 competence protein ComA Machinery gene
  DV384_RS06035 - 1230874..1233468 (+) 2595 WP_114934599.1 penicillin-binding protein 1A -
  DV384_RS06040 - 1233545..1234390 (+) 846 WP_114934600.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  DV384_RS06045 - 1234559..1234888 (+) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19752.67 Da        Isoelectric Point: 9.4939

>NTDB_id=304502 DV384_RS06025 WP_005656467.1 1229471..1229977(-) (comB) [Haemophilus influenzae strain M17648]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKTTMRIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK

Nucleotide


Download         Length: 507 bp        

>NTDB_id=304502 DV384_RS06025 WP_005656467.1 1229471..1229977(-) (comB) [Haemophilus influenzae strain M17648]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTACTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTCGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCGAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGTTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

98.81

100

0.988
  comB Haemophilus influenzae Rd KW20

98.81

100

0.988

Multiple sequence alignment