Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   HYN46_RS03035 Genome accession   NZ_CP031222
Coordinates   675972..678182 (+) Length   736 a.a.
NCBI ID   WP_407640785.1    Uniprot ID   -
Organism   Aquirhabdus parva strain HYN0046     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 670972..683182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYN46_RS03015 (HYN46_03015) pilM 672813..673871 (+) 1059 WP_114898043.1 pilus assembly protein PilM Machinery gene
  HYN46_RS03020 (HYN46_03020) pilN 673874..674509 (+) 636 WP_114898044.1 PilN domain-containing protein Machinery gene
  HYN46_RS03025 (HYN46_03025) pilO 674506..675222 (+) 717 WP_114898045.1 type 4a pilus biogenesis protein PilO Machinery gene
  HYN46_RS03030 (HYN46_03030) pilP 675321..675809 (+) 489 WP_228254924.1 pilus assembly protein PilP Machinery gene
  HYN46_RS03035 (HYN46_03035) pilQ 675972..678182 (+) 2211 WP_407640785.1 type IV pilus secretin PilQ Machinery gene
  HYN46_RS03040 (HYN46_03040) aroK 678227..678799 (+) 573 WP_114900556.1 shikimate kinase AroK -
  HYN46_RS03045 (HYN46_03045) aroB 678904..680004 (+) 1101 WP_114900557.1 3-dehydroquinate synthase -
  HYN46_RS03050 (HYN46_03050) - 680001..680876 (+) 876 WP_114898046.1 hypothetical protein -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 78402.13 Da        Isoelectric Point: 9.4736

>NTDB_id=304162 HYN46_RS03035 WP_407640785.1 675972..678182(+) (pilQ) [Aquirhabdus parva strain HYN0046]
MRSVARRFVIKALPMHLAIVSACAITMTAYASSTVTLTGINTTALPNNETELRLAFDGTPPNPQAYQLDKPARLVVDLPN
AKSSLASRYQDIGSGNARSLAVVDNAERTRLVVNLSQASGYSTRVEGNTLVLKVGGTKVSAAKAVATPTSVNTAMPVAGN
KNIAYEVTDVDFRRGGAGEGNVLIALNNPNAPVDVQQQGTKIIARFLGTKLPERLRRRLDVNDFGTPIKTIDAYNEGNNG
ILVIQPQGDFEYLAYQADNKLTISVKPVVQQKTAEAKLPTYTGQKLSLNFQDIEVRSVLQLIADFTGLNLVASDTVAGKI
TIRLQNVPWDQALDIVLKTKGLDKRRNGNVIMIAPADELAAREKIEIQNNRQVEQLAPLTTQYIQLSYAKASDLLLLITS
GRNNGGGGNGSNGIGSGGDANVGSLLSPRGTVSIDARTNTLIVQDTAVTIDKVREMIARLDVPIKQVMIEARIVRASDTF
SKELGVQWGILSHGTASRPNLLVGGNETTLFDLRNPQSSTLNGQTGVSYTITRPDNLSVDLAATGSGASSIALGVMSISD
IMLDLTLSALQADGKGEVIATPKVLTLDKQKARVAAGTQIPYQQSTSSGATSVAFVNAELSLEVTPSITPDGRVGMDLLV
NADSPGDAAPNGQLTINTNRLQTNVLVDDGQTVVLGGIFQNQISSSTTKVPFLGDLPYLGRLFRHTLQSNNKQEMLIFVT
PRLVNSTTQVNQSAKP

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=304162 HYN46_RS03035 WP_407640785.1 675972..678182(+) (pilQ) [Aquirhabdus parva strain HYN0046]
ATGCGCTCAGTCGCACGTCGTTTTGTGATAAAAGCATTGCCTATGCATTTGGCTATTGTGAGCGCTTGTGCGATTACGAT
GACAGCCTATGCAAGTAGTACGGTGACGCTCACTGGAATAAACACGACGGCATTGCCTAATAATGAGACTGAACTTCGTC
TTGCATTTGATGGTACTCCACCTAATCCGCAAGCTTATCAATTAGACAAGCCAGCACGCTTGGTCGTAGATTTGCCTAAT
GCAAAAAGTAGTTTAGCGAGTCGTTATCAGGATATTGGTTCAGGAAATGCACGTAGCTTGGCTGTTGTCGATAATGCAGA
GAGAACTCGTTTAGTTGTAAACTTGAGTCAAGCCAGTGGATATTCAACACGTGTTGAAGGGAATACTTTGGTATTGAAAG
TTGGCGGTACTAAAGTATCAGCTGCTAAAGCTGTCGCGACACCTACATCAGTAAATACTGCGATGCCTGTTGCTGGAAAC
AAAAACATCGCCTATGAAGTAACAGATGTTGACTTTCGTCGTGGCGGTGCAGGAGAGGGTAATGTTCTCATTGCGCTGAA
TAACCCGAATGCACCTGTCGATGTTCAGCAGCAAGGGACTAAAATCATTGCGCGTTTTTTGGGTACGAAGTTGCCTGAGC
GTTTACGTCGTCGTTTAGACGTGAATGATTTCGGCACTCCAATTAAAACTATTGATGCTTATAATGAAGGCAATAATGGC
ATATTGGTGATTCAGCCACAGGGGGATTTCGAGTATCTGGCCTATCAGGCAGATAATAAACTCACCATCAGTGTAAAGCC
AGTCGTTCAGCAAAAGACGGCTGAAGCCAAACTCCCAACTTATACTGGACAAAAGTTATCATTAAACTTTCAAGATATTG
AAGTGCGTTCAGTTTTACAATTAATCGCTGATTTTACTGGCCTTAATTTGGTTGCCAGCGATACCGTTGCAGGGAAAATT
ACGATCCGTTTACAGAACGTTCCTTGGGATCAGGCTTTAGATATTGTGTTAAAAACCAAAGGTCTAGATAAACGTCGCAA
TGGTAATGTGATTATGATTGCGCCTGCGGATGAACTAGCGGCACGTGAAAAGATTGAAATTCAAAATAATCGCCAAGTTG
AACAACTGGCACCGTTGACGACGCAATATATTCAATTGAGTTATGCAAAGGCAAGTGATCTACTTCTGTTAATTACCTCT
GGGCGTAATAATGGTGGAGGAGGTAATGGCTCTAATGGAATTGGTTCTGGAGGGGATGCAAACGTAGGAAGCTTACTTTC
TCCTCGGGGAACTGTATCGATTGACGCGCGCACCAATACTCTTATTGTGCAAGATACAGCAGTAACGATTGATAAAGTCC
GTGAAATGATTGCGCGTCTTGATGTTCCTATTAAGCAAGTTATGATTGAGGCTCGGATTGTACGTGCTTCAGATACCTTT
AGTAAGGAATTAGGCGTGCAATGGGGTATTCTCTCTCACGGTACGGCAAGTCGACCAAATTTATTGGTTGGTGGTAATGA
GACAACATTGTTTGACCTACGTAATCCGCAAAGTTCGACTTTGAATGGTCAAACAGGGGTGAGTTATACCATTACCCGAC
CCGATAATTTGAGTGTGGATTTAGCTGCGACGGGTTCTGGTGCCAGTAGTATTGCACTGGGTGTGATGAGCATCTCTGAT
ATTATGCTGGATTTAACCTTATCAGCGCTTCAAGCTGATGGTAAAGGTGAGGTTATCGCGACACCTAAAGTTTTAACTTT
AGATAAGCAAAAAGCCCGGGTTGCTGCGGGTACACAAATTCCATATCAGCAATCGACATCCAGTGGCGCAACCTCAGTTG
CTTTTGTTAATGCTGAGCTCAGTTTAGAAGTCACACCAAGTATTACCCCTGATGGTCGTGTCGGAATGGATTTATTGGTC
AACGCTGACAGTCCTGGCGATGCCGCTCCAAATGGGCAATTGACCATCAACACCAATCGATTACAAACAAATGTATTGGT
TGATGATGGACAGACAGTTGTGTTGGGTGGTATTTTCCAGAATCAGATTTCAAGTAGTACGACTAAAGTTCCATTCTTAG
GCGATTTGCCTTATCTTGGTCGTTTATTTAGACATACACTTCAGTCTAATAATAAACAAGAAATGCTGATTTTTGTCACA
CCACGTTTGGTCAATAGCACCACTCAGGTGAATCAAAGTGCTAAACCTTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(381-466)

Secretin and TonB N terminus short domain (STN)

(309-355)

AMIN domain (AMIN)

(47-133)

Bacterial type II and III secretion system protein (Secretin)

(569-724)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

52.807

100

0.537
  pilQ Acinetobacter baumannii strain A118

52.674

100

0.535
  comQ Acinetobacter baylyi ADP1

52.725

99.728

0.526
  pilQ Pseudomonas aeruginosa PAK

43.75

97.826

0.428
  pilQ Legionella pneumophila strain Lp02

38.054

94.973

0.361
  pilQ Legionella pneumophila strain ERS1305867

38.054

94.973

0.361

Multiple sequence alignment