Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | HYN46_RS03030 | Genome accession | NZ_CP031222 |
| Coordinates | 675321..675809 (+) | Length | 162 a.a. |
| NCBI ID | WP_228254924.1 | Uniprot ID | - |
| Organism | Aquirhabdus parva strain HYN0046 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 670321..680809
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HYN46_RS03015 (HYN46_03015) | pilM | 672813..673871 (+) | 1059 | WP_114898043.1 | pilus assembly protein PilM | Machinery gene |
| HYN46_RS03020 (HYN46_03020) | pilN | 673874..674509 (+) | 636 | WP_114898044.1 | PilN domain-containing protein | Machinery gene |
| HYN46_RS03025 (HYN46_03025) | pilO | 674506..675222 (+) | 717 | WP_114898045.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| HYN46_RS03030 (HYN46_03030) | pilP | 675321..675809 (+) | 489 | WP_228254924.1 | pilus assembly protein PilP | Machinery gene |
| HYN46_RS03035 (HYN46_03035) | pilQ | 675972..678182 (+) | 2211 | WP_407640785.1 | type IV pilus secretin PilQ | Machinery gene |
| HYN46_RS03040 (HYN46_03040) | aroK | 678227..678799 (+) | 573 | WP_114900556.1 | shikimate kinase AroK | - |
| HYN46_RS03045 (HYN46_03045) | aroB | 678904..680004 (+) | 1101 | WP_114900557.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 162 a.a. Molecular weight: 17759.67 Da Isoelectric Point: 7.2768
>NTDB_id=304161 HYN46_RS03030 WP_228254924.1 675321..675809(+) (pilP) [Aquirhabdus parva strain HYN0046]
MLSTGCSSRVDGVAMEMQKIHNEPTLPITPAPVFLPVPTFTYAAQGFRSPFIALSLAEEMKVMAGRHVMPDLSRPLQFLE
QFPLENLRMRGTIHNQKGPLYGLIEDPQGGVLRVQVGNYLGKNYGRIVGITPTQVNLVEIVPDGKDGFVERPRSLIMVDA
GG
MLSTGCSSRVDGVAMEMQKIHNEPTLPITPAPVFLPVPTFTYAAQGFRSPFIALSLAEEMKVMAGRHVMPDLSRPLQFLE
QFPLENLRMRGTIHNQKGPLYGLIEDPQGGVLRVQVGNYLGKNYGRIVGITPTQVNLVEIVPDGKDGFVERPRSLIMVDA
GG
Nucleotide
Download Length: 489 bp
>NTDB_id=304161 HYN46_RS03030 WP_228254924.1 675321..675809(+) (pilP) [Aquirhabdus parva strain HYN0046]
ATGTTATCAACCGGTTGTAGCTCGCGGGTTGATGGTGTTGCAATGGAAATGCAGAAAATCCATAACGAGCCGACCTTACC
CATTACACCTGCACCTGTGTTCTTGCCAGTACCCACGTTCACGTATGCAGCACAAGGATTTCGGAGTCCATTTATTGCAC
TGAGTCTTGCAGAAGAAATGAAGGTTATGGCTGGACGTCATGTGATGCCTGATTTGAGTCGACCATTACAGTTTTTAGAG
CAATTTCCATTAGAAAATCTACGTATGCGTGGAACGATACATAATCAAAAAGGTCCTCTTTATGGTTTGATTGAAGATCC
TCAAGGTGGTGTGCTTCGCGTTCAAGTTGGTAACTATTTAGGGAAAAATTATGGGCGTATTGTGGGAATTACACCTACCC
AAGTTAACTTGGTTGAAATTGTCCCTGATGGAAAGGATGGTTTTGTTGAGCGGCCACGTAGCCTAATCATGGTTGATGCA
GGCGGATAA
ATGTTATCAACCGGTTGTAGCTCGCGGGTTGATGGTGTTGCAATGGAAATGCAGAAAATCCATAACGAGCCGACCTTACC
CATTACACCTGCACCTGTGTTCTTGCCAGTACCCACGTTCACGTATGCAGCACAAGGATTTCGGAGTCCATTTATTGCAC
TGAGTCTTGCAGAAGAAATGAAGGTTATGGCTGGACGTCATGTGATGCCTGATTTGAGTCGACCATTACAGTTTTTAGAG
CAATTTCCATTAGAAAATCTACGTATGCGTGGAACGATACATAATCAAAAAGGTCCTCTTTATGGTTTGATTGAAGATCC
TCAAGGTGGTGTGCTTCGCGTTCAAGTTGGTAACTATTTAGGGAAAAATTATGGGCGTATTGTGGGAATTACACCTACCC
AAGTTAACTTGGTTGAAATTGTCCCTGATGGAAAGGATGGTTTTGTTGAGCGGCCACGTAGCCTAATCATGGTTGATGCA
GGCGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Acinetobacter baumannii D1279779 |
54.194 |
95.679 |
0.519 |
| comL | Acinetobacter baylyi ADP1 |
53.548 |
95.679 |
0.512 |