Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   HYN46_RS03015 Genome accession   NZ_CP031222
Coordinates   672813..673871 (+) Length   352 a.a.
NCBI ID   WP_114898043.1    Uniprot ID   A0A345P3S4
Organism   Aquirhabdus parva strain HYN0046     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 667813..678871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYN46_RS03010 (HYN46_03010) - 669653..672352 (-) 2700 WP_114898042.1 penicillin-binding protein 1A -
  HYN46_RS03015 (HYN46_03015) pilM 672813..673871 (+) 1059 WP_114898043.1 pilus assembly protein PilM Machinery gene
  HYN46_RS03020 (HYN46_03020) pilN 673874..674509 (+) 636 WP_114898044.1 PilN domain-containing protein Machinery gene
  HYN46_RS03025 (HYN46_03025) pilO 674506..675222 (+) 717 WP_114898045.1 type 4a pilus biogenesis protein PilO Machinery gene
  HYN46_RS03030 (HYN46_03030) pilP 675321..675809 (+) 489 WP_228254924.1 pilus assembly protein PilP Machinery gene
  HYN46_RS03035 (HYN46_03035) pilQ 675972..678182 (+) 2211 WP_407640785.1 type IV pilus secretin PilQ Machinery gene
  HYN46_RS03040 (HYN46_03040) aroK 678227..678799 (+) 573 WP_114900556.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38468.54 Da        Isoelectric Point: 4.3326

>NTDB_id=304158 HYN46_RS03015 WP_114898043.1 672813..673871(+) (pilM) [Aquirhabdus parva strain HYN0046]
MFSFGRKQNSSLVGLDISTTSVKLLELSIRDGRYYVESYGSEALPPNAVVEKNIADVEVVGEAIGQLVRRASPRSSQAAV
AVAGSAVITKLIDMEADMTDDEREMQIRLDADQYIPYPLSEVNLDFEVLGPSAVVPGRVSVLLAASRSENIEQRVDVLEI
GNLTAKVVDVESYAIERTFGLMVDALPDSPDIVAIVDIGHTMTTLNVLRHDQIIYTREQLFGGKQLTEDIQRRYGLSFEE
ASRSKKEGNLPDDYEPEVLIPFMESIAQQVTRSLQFFFSSSQYNDVDHILLAGGSASIPGLARLIQDKLGNRVSVANPFT
HMGFAPQIDTNAIGNDAPALIIACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=304158 HYN46_RS03015 WP_114898043.1 672813..673871(+) (pilM) [Aquirhabdus parva strain HYN0046]
GTGTTTTCCTTTGGACGCAAACAAAATTCTAGCCTAGTAGGGTTAGACATCAGCACGACGTCTGTCAAGCTTTTAGAGCT
CAGTATTCGTGATGGTCGCTATTATGTCGAAAGTTACGGCTCAGAGGCTCTTCCTCCAAATGCAGTAGTTGAGAAAAATA
TTGCTGATGTTGAAGTGGTTGGAGAGGCTATTGGTCAGCTCGTAAGACGTGCTAGCCCAAGATCTTCTCAGGCAGCTGTT
GCTGTAGCAGGGTCCGCTGTGATCACTAAACTGATCGATATGGAAGCGGATATGACGGACGATGAGCGTGAAATGCAGAT
TCGTTTGGATGCCGATCAATATATTCCTTACCCGTTGTCTGAAGTCAACTTGGATTTCGAAGTGCTTGGTCCGTCTGCTG
TTGTGCCTGGACGGGTTAGCGTATTGCTTGCGGCTTCGCGTTCAGAAAATATTGAACAGCGTGTCGATGTGCTTGAGATT
GGTAATTTAACTGCCAAAGTGGTTGATGTTGAATCTTACGCAATTGAACGCACCTTTGGTTTAATGGTTGATGCCCTACC
TGATAGTCCAGATATTGTCGCGATTGTTGATATCGGTCATACGATGACGACGCTTAACGTGCTACGTCATGATCAGATCA
TCTATACCCGTGAACAACTCTTTGGCGGCAAGCAACTGACAGAGGATATTCAACGTCGCTATGGTTTGTCTTTTGAGGAA
GCCAGCCGTTCAAAAAAAGAAGGCAATCTTCCTGACGATTACGAGCCTGAAGTGCTGATTCCGTTTATGGAATCCATTGC
ACAACAAGTCACTCGTTCTCTGCAGTTTTTCTTCTCGTCTAGTCAATATAACGATGTCGATCATATTTTGCTAGCTGGTG
GCAGTGCCAGTATTCCGGGGCTTGCACGCTTGATTCAAGATAAGTTAGGCAATCGAGTAAGCGTGGCTAATCCATTTACT
CATATGGGTTTTGCCCCTCAAATCGATACCAATGCGATTGGAAATGATGCACCTGCGCTCATTATCGCCTGTGGACTTGC
GCTCAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345P3S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

61.364

100

0.614
  comM Acinetobacter nosocomialis M2

61.364

100

0.614
  comM Acinetobacter baylyi ADP1

57.955

100

0.58
  pilM Legionella pneumophila strain ERS1305867

46.893

100

0.472

Multiple sequence alignment