Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   HYN46_RS03025 Genome accession   NZ_CP031222
Coordinates   674506..675222 (+) Length   238 a.a.
NCBI ID   WP_114898045.1    Uniprot ID   A0A345P3S6
Organism   Aquirhabdus parva strain HYN0046     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 669506..680222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYN46_RS03010 (HYN46_03010) - 669653..672352 (-) 2700 WP_114898042.1 penicillin-binding protein 1A -
  HYN46_RS03015 (HYN46_03015) pilM 672813..673871 (+) 1059 WP_114898043.1 pilus assembly protein PilM Machinery gene
  HYN46_RS03020 (HYN46_03020) pilN 673874..674509 (+) 636 WP_114898044.1 PilN domain-containing protein Machinery gene
  HYN46_RS03025 (HYN46_03025) pilO 674506..675222 (+) 717 WP_114898045.1 type 4a pilus biogenesis protein PilO Machinery gene
  HYN46_RS03030 (HYN46_03030) pilP 675321..675809 (+) 489 WP_228254924.1 pilus assembly protein PilP Machinery gene
  HYN46_RS03035 (HYN46_03035) pilQ 675972..678182 (+) 2211 WP_407640785.1 type IV pilus secretin PilQ Machinery gene
  HYN46_RS03040 (HYN46_03040) aroK 678227..678799 (+) 573 WP_114900556.1 shikimate kinase AroK -
  HYN46_RS03045 (HYN46_03045) aroB 678904..680004 (+) 1101 WP_114900557.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26594.37 Da        Isoelectric Point: 5.4614

>NTDB_id=304160 HYN46_RS03025 WP_114898045.1 674506..675222(+) (pilO) [Aquirhabdus parva strain HYN0046]
MKADNNPLAAKSISKKFSFEEFSNSFKSLDPQNMGNWPLPVKITAFIFIGVFVFVLAYLLLIAPVREDIAAAEAQERSLL
NDYRDKDSKLRNLLQYQKQVEEMESTFGQLLQQLPKETEIPGLVEDINYTGVGSGLQFDKINVEKEVTKDFFIELPMTIK
GRGDYHSFGAFVSALAALPRIVTIDDFDISPINDKSKSEIPVLGLTVNAKTYRYNDKVDSKNKPKSPQDAAKKTGSAS

Nucleotide


Download         Length: 717 bp        

>NTDB_id=304160 HYN46_RS03025 WP_114898045.1 674506..675222(+) (pilO) [Aquirhabdus parva strain HYN0046]
ATGAAGGCGGACAATAACCCTCTAGCAGCTAAGTCGATTTCAAAAAAATTCTCCTTTGAGGAGTTTAGTAATAGTTTTAA
ATCGCTAGATCCGCAGAATATGGGGAACTGGCCCCTCCCAGTAAAAATTACTGCATTTATTTTTATCGGTGTTTTTGTAT
TTGTGCTTGCTTATCTTTTATTGATTGCTCCTGTACGCGAGGATATTGCAGCGGCTGAAGCGCAGGAGCGAAGTTTATTA
AATGATTATCGTGACAAGGATTCAAAACTTCGAAATTTGTTGCAATATCAGAAACAAGTCGAAGAAATGGAGTCTACCTT
TGGTCAATTGTTACAGCAACTTCCTAAAGAAACTGAAATTCCTGGGCTGGTTGAAGATATTAATTATACCGGTGTAGGCA
GTGGCTTGCAGTTCGATAAAATTAATGTAGAAAAAGAAGTGACAAAGGACTTCTTTATTGAATTGCCAATGACGATCAAA
GGTCGTGGTGACTATCATTCATTTGGTGCTTTTGTCAGTGCCTTGGCTGCATTACCACGGATTGTGACCATTGATGATTT
TGATATTTCTCCAATTAATGATAAATCAAAATCTGAAATACCGGTCTTGGGTTTGACCGTGAATGCAAAAACTTATCGTT
ATAACGATAAAGTCGATTCCAAAAATAAACCCAAAAGCCCGCAGGATGCCGCAAAGAAAACAGGGAGTGCATCATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(69-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345P3S6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

54.626

95.378

0.521
  comO Acinetobacter baylyi ADP1

57

84.034

0.479

Multiple sequence alignment