Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DN405_RS10400 Genome accession   NZ_CP031065
Coordinates   1990253..1990588 (+) Length   111 a.a.
NCBI ID   WP_000982018.1    Uniprot ID   A0A9W5VT75
Organism   Bacillus sp. SH8-8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1985253..1995588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN405_RS10375 (DN405_10355) - 1985403..1986275 (-) 873 WP_149149537.1 hypothetical protein -
  DN405_RS10380 (DN405_10360) - 1986385..1987032 (+) 648 WP_149149538.1 HD domain-containing protein -
  DN405_RS10385 (DN405_10365) - 1987029..1988924 (+) 1896 WP_149149539.1 ABC-F family ATP-binding cassette domain-containing protein -
  DN405_RS10390 (DN405_10370) - 1989000..1989731 (+) 732 WP_001260655.1 Bax inhibitor-1/YccA family protein -
  DN405_RS10395 (DN405_10375) - 1989837..1990091 (+) 255 WP_000975137.1 DUF4318 domain-containing protein -
  DN405_RS10400 (DN405_10380) ssbA 1990253..1990588 (+) 336 WP_000982018.1 single-stranded DNA-binding protein Machinery gene
  DN405_RS10405 (DN405_10385) - 1990926..1991486 (-) 561 WP_016122406.1 AAA family ATPase -
  DN405_RS10410 (DN405_10390) - 1991904..1993031 (+) 1128 WP_000692566.1 virulence factor -
  DN405_RS10415 (DN405_10395) - 1993035..1993418 (+) 384 WP_016122407.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  DN405_RS10420 (DN405_10400) - 1993502..1993936 (+) 435 WP_000063706.1 BrxA/BrxB family bacilliredoxin -
  DN405_RS10425 (DN405_10405) - 1993986..1994762 (+) 777 WP_000637459.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12771.61 Da        Isoelectric Point: 9.4344

>NTDB_id=303111 DN405_RS10400 WP_000982018.1 1990253..1990588(+) (ssbA) [Bacillus sp. SH8-8]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIQTS
NYDDEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=303111 DN405_RS10400 WP_000982018.1 1990253..1990588(+) (ssbA) [Bacillus sp. SH8-8]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTTGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGCAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAGGGATCACTCGTTGGGATTACAGGGCGTATTCAGACTAGT
AATTACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

95.495

0.559
  ssb Latilactobacillus sakei subsp. sakei 23K

55.66

95.495

0.532
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.893

100

0.514
  ssbB Lactococcus lactis subsp. cremoris KW2

45.714

94.595

0.432
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbA Streptococcus mutans UA159

40

99.099

0.396
  ssbB/cilA Streptococcus mitis NCTC 12261

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae TIGR4

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae D39

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae R6

39.091

99.099

0.387
  ssbB/cilA Streptococcus mitis SK321

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae Rx1

39.091

99.099

0.387

Multiple sequence alignment