Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DUN60_RS14490 Genome accession   NZ_CP031055
Coordinates   3226356..3227468 (+) Length   370 a.a.
NCBI ID   WP_114634154.1    Uniprot ID   -
Organism   Vibrio splendidus strain Vibrio sp     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3221356..3232468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DUN60_RS14470 rsmB 3222211..3223491 (-) 1281 WP_017077320.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  DUN60_RS14475 fmt 3223611..3224576 (-) 966 WP_102539914.1 methionyl-tRNA formyltransferase -
  DUN60_RS14480 def 3224615..3225127 (-) 513 WP_004735769.1 peptide deformylase -
  DUN60_RS14485 - 3225268..3226359 (+) 1092 WP_114634153.1 LysM peptidoglycan-binding domain-containing protein -
  DUN60_RS14490 dprA 3226356..3227468 (+) 1113 WP_114634154.1 DNA-processing protein DprA Machinery gene
  DUN60_RS14495 - 3227472..3227948 (+) 477 WP_004735774.1 DUF494 family protein -
  DUN60_RS14500 - 3227961..3228530 (+) 570 WP_114634155.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  DUN60_RS14505 - 3228632..3229762 (-) 1131 WP_114634156.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  DUN60_RS14510 purE 3229768..3230253 (-) 486 WP_004735777.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  DUN60_RS14515 - 3230449..3231006 (+) 558 WP_029223376.1 L-threonylcarbamoyladenylate synthase -
  DUN60_RS14520 hemF 3231026..3231943 (+) 918 WP_050649827.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40137.95 Da        Isoelectric Point: 6.8795

>NTDB_id=302984 DUN60_RS14490 WP_114634154.1 3226356..3227468(+) (dprA) [Vibrio splendidus strain Vibrio sp]
MNEQQLSVWLTLSFVPQLGGKRLSRLLSIDSPLNIVGYSSQQLQALGLSAKQIAYLREQAPREVEACLEWQARQPNHHII
TPNCSHYPKLLNETASAPSVLFVKGHVEKLIEPQIAMVGSRNASLEGLQTAKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLDSIYPARHRNLADRICENGALISEFRPSAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHNPTSRGGNSLIKAGACLVQSAQDVLIEIKSLLDWSIDQQPSLFEPTPSMGENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=302984 DUN60_RS14490 WP_114634154.1 3226356..3227468(+) (dprA) [Vibrio splendidus strain Vibrio sp]
GTGAATGAGCAACAACTGAGTGTTTGGTTAACTCTAAGTTTTGTTCCGCAATTGGGTGGCAAGCGCCTTTCTCGACTGCT
GAGTATTGATTCTCCTTTGAATATTGTTGGTTACTCAAGTCAGCAACTGCAAGCGCTTGGTTTGTCTGCCAAGCAAATTG
CCTATCTAAGAGAGCAAGCCCCGAGAGAAGTGGAGGCTTGCCTAGAGTGGCAAGCAAGACAACCCAACCATCACATCATT
ACCCCGAATTGCTCGCATTATCCCAAACTGCTGAATGAGACCGCCTCCGCGCCAAGCGTGCTTTTCGTTAAAGGTCACGT
TGAAAAACTGATTGAGCCTCAAATCGCTATGGTCGGCAGTCGCAATGCCAGTCTCGAAGGGTTGCAAACCGCGAAGTCCT
TCGCCAAAGAGTTCGTCCAAAACGGTTTGATTGTCACCAGTGGCTTAGCACTCGGTATCGATGGCTATGCTCATGATGGT
GCTCTAGATAAAGGAGGGGAAACTTTTGCTGTATTGGGTTCTGGATTGGATTCCATTTATCCTGCGCGACACAGAAATTT
AGCCGATAGGATCTGTGAAAATGGTGCGTTGATTTCAGAGTTTCGCCCAAGTGCCAAACCACGACCTGAACATTTCCCTC
GCCGTAACCGTATTATAAGTGGGTTATCGCTCGGAACCTTGGTGGTTGAAGCGGCTGAGAAGAGTGGTTCTTTGATTACA
GCTCGCTATGCCATGGAGCAAGGCCGAGAGGTGTTTGCGCTTCCTGGCTCTATTCATAACCCAACCAGCCGTGGCGGTAA
TAGCTTAATCAAAGCTGGAGCATGCTTGGTACAGAGTGCACAAGATGTTCTGATTGAAATAAAGAGTCTGTTAGACTGGT
CTATCGATCAGCAACCCAGCTTGTTCGAACCTACGCCCAGTATGGGGGAAAATGAACAATTGCCATTTCCACAGCTGTTA
GCTAACGTAGGGTTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)

DprA winged helix domain (DprA_WH)

(317-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

67.48

99.73

0.673
  dprA Vibrio cholerae strain A1552

58.289

100

0.589
  dprA Glaesserella parasuis strain SC1401

47.581

100

0.478
  dprA Legionella pneumophila strain ERS1305867

44.134

96.757

0.427
  dprA Neisseria meningitidis MC58

38.791

100

0.416
  dprA Neisseria meningitidis strain C311

38.791

100

0.416
  dprA Haemophilus influenzae Rd KW20

43.931

93.514

0.411
  dprA Neisseria gonorrhoeae strain FA1090

37.722

100

0.403
  dprA Neisseria gonorrhoeae MS11

37.722

100

0.403
  dprA Acinetobacter baumannii D1279779

42.727

89.189

0.381
  dprA Acinetobacter baumannii strain A118

41.718

88.108

0.368
  dprA Acinetobacter baylyi ADP1

40

90.541

0.362

Multiple sequence alignment