Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   DTO10_RS10525 Genome accession   NZ_CP030926
Coordinates   2205713..2206075 (-) Length   120 a.a.
NCBI ID   WP_053348513.1    Uniprot ID   -
Organism   Peribacillus butanolivorans strain PHB-7a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2200713..2211075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DTO10_RS10510 (DTO10_10510) - 2201721..2203337 (-) 1617 WP_116821195.1 ABC transporter substrate-binding protein -
  DTO10_RS10515 (DTO10_10515) - 2203382..2204350 (-) 969 WP_116821196.1 ABC transporter ATP-binding protein -
  DTO10_RS10520 (DTO10_10520) - 2204331..2205335 (-) 1005 WP_053348514.1 ABC transporter ATP-binding protein -
  DTO10_RS10525 (DTO10_10525) ssbB 2205713..2206075 (-) 363 WP_053348513.1 single-stranded DNA-binding protein Machinery gene
  DTO10_RS10530 (DTO10_10530) - 2206461..2206895 (+) 435 WP_053348512.1 YwpF family protein -
  DTO10_RS10535 (DTO10_10535) - 2207023..2207310 (-) 288 WP_053348511.1 hypothetical protein -
  DTO10_RS10540 (DTO10_10540) fabZ 2207602..2208030 (-) 429 WP_053348510.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DTO10_RS10545 (DTO10_10545) - 2208155..2208484 (-) 330 WP_244923542.1 DNA-directed RNA polymerase subunit beta -
  DTO10_RS10550 (DTO10_10550) - 2208588..2209436 (-) 849 WP_098177162.1 flagellar hook-basal body protein -
  DTO10_RS10555 (DTO10_10555) - 2209493..2210332 (-) 840 WP_098177161.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13636.61 Da        Isoelectric Point: 9.6563

>NTDB_id=302309 DTO10_RS10525 WP_053348513.1 2205713..2206075(-) (ssbB) [Peribacillus butanolivorans strain PHB-7a]
MINQITLVGRLTKDPELRYTPDGKAVSNITLAVNRNFRNTVGDYEADFVQCIIWKKTAENTAQYCKKGALIGITGRIQTR
RYENQEGKKVYVTEVVAEKVQFIGSKQNDVKPKDFEHIGL

Nucleotide


Download         Length: 363 bp        

>NTDB_id=302309 DTO10_RS10525 WP_053348513.1 2205713..2206075(-) (ssbB) [Peribacillus butanolivorans strain PHB-7a]
ATGATCAACCAAATTACCCTTGTAGGGAGACTGACGAAGGACCCCGAATTAAGATACACACCGGATGGCAAGGCAGTTTC
CAATATTACGTTAGCGGTCAACCGTAACTTTCGTAATACAGTAGGCGATTATGAGGCGGACTTTGTACAGTGTATCATAT
GGAAAAAGACAGCTGAAAACACCGCTCAGTATTGCAAAAAAGGGGCCTTAATTGGCATTACCGGCAGAATTCAAACGAGG
AGATACGAAAACCAAGAAGGTAAAAAAGTATATGTTACCGAAGTTGTCGCCGAGAAGGTTCAATTCATAGGATCTAAACA
AAATGATGTTAAGCCAAAGGATTTTGAGCATATTGGTTTATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.404

95

0.583
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.321

88.333

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

88.333

0.5
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.283

88.333

0.4
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.396

88.333

0.383
  ssbB/cilA Streptococcus mitis NCTC 12261

43.396

88.333

0.383
  ssbA Streptococcus mutans UA159

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae Rx1

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae D39

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae R6

42.453

88.333

0.375
  ssbB/cilA Streptococcus mitis SK321

42.453

88.333

0.375
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

87.5

0.367

Multiple sequence alignment