Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CHC75_RS18835 Genome accession   NZ_CP030235
Coordinates   3792897..3793502 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica strain SA20031245     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3787897..3798502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHC75_RS18815 (CHC75_18810) - 3788292..3790052 (-) 1761 WP_000156454.1 Lon protease family protein -
  CHC75_RS18820 (CHC75_18815) matP 3790238..3790690 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  CHC75_RS18825 (CHC75_18820) ompA 3790762..3791814 (-) 1053 WP_001670727.1 porin OmpA -
  CHC75_RS18830 (CHC75_18825) sulA 3792171..3792680 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  CHC75_RS18835 (CHC75_18830) sxy/tfoX 3792897..3793502 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  CHC75_RS18840 (CHC75_18835) yccS 3793489..3795642 (-) 2154 WP_079798559.1 YccS family putative transporter -
  CHC75_RS18845 (CHC75_18840) - 3795661..3796107 (-) 447 WP_001261222.1 YccF domain-containing protein -
  CHC75_RS18850 (CHC75_18845) helD 3796231..3798285 (+) 2055 WP_079798558.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=300288 CHC75_RS18835 WP_001202375.1 3792897..3793502(+) (sxy/tfoX) [Salmonella enterica strain SA20031245]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=300288 CHC75_RS18835 WP_001202375.1 3792897..3793502(+) (sxy/tfoX) [Salmonella enterica strain SA20031245]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAGTGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment