Detailed information NTG0299472

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: DP112_RS00890
• Genome accession: NZ_CP030125
• Coordinates: 138177..138572 (+)
• Length: 131 a.a.
• NCBI ID: WP_114866125.1
• Uniprot ID: -
• Organism: Streptococcus suis strain HA1003
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	138830..139303	138177..138572	flank	258

Gene organization within MGE regions

Location: 138177..139303

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DP112_RS00890 (DP112_00890)	ssbA	138177..138572 (+)	396	WP_114866125.1	single-stranded DNA-binding protein	Machinery gene
DP112_RS00895 (DP112_00895)	tnpA	138830..139303 (+)	474	WP_044685873.1	IS200/IS605 family transposase	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 14867.70 Da
• Isoelectric Point: 5.0026

>NTDB_id=299472 DP112_RS00890 WP_114866125.1 138177..138572(+) (ssbA) [Streptococcus suis strain HA1003]
MYNKTILIGRLTAQPELTQTPNGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISVDGELRTR
KYEKDGSNHYVTEILGNTFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=299472 DP112_RS00890 WP_114866125.1 138177..138572(+) (ssbA) [Streptococcus suis strain HA1003]
ATGTATAATAAAACAATTCTAATCGGTCGCTTGACGGCCCAACCTGAACTCACTCAAACCCCTAACGGCAAAAATCTGAC
CCGTGTAACCGTCGCAGTCAACCGCCGTTTCAAGACGGAGAATGGTGAACGGGAAGCAGATTTTCTCAATGTTATTTTCT
GGGGCAAACTGGCGGAAACACTTGTTTCCTATGGTAGCAAGGGCAGTCTGATTTCTGTTGACGGTGAATTGCGGACCCGT
AAATACGAAAAAGACGGCAGCAACCACTATGTGACCGAAATTTTGGGCAATACTTTCCAGCTGCTCGAAAGCCGTGCCCA
ACGTGCTATGCGAGAAAACAATACTGGCGATGACCTAGCTGATTTGGTCTTGGAAGAGGAAGAATTGCCGTTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	75.573	100	0.756
ssbB	Streptococcus sobrinus strain NIDR 6715-7	74.046	100	0.74
ssbB/cilA	Streptococcus pneumoniae TIGR4	73.282	100	0.733
ssbB/cilA	Streptococcus pneumoniae D39	72.519	100	0.725
ssbB/cilA	Streptococcus mitis SK321	72.519	100	0.725
ssbB/cilA	Streptococcus pneumoniae R6	72.519	100	0.725
ssbB/cilA	Streptococcus mitis NCTC 12261	72.519	100	0.725
ssbB/cilA	Streptococcus pneumoniae Rx1	72.519	100	0.725
ssbB	Lactococcus lactis subsp. cremoris KW2	65.179	85.496	0.557
ssb	Latilactobacillus sakei subsp. sakei 23K	45.133	86.26	0.389
ssbA	Bacillus subtilis subsp. subtilis str. 168	47.17	80.916	0.382
ssbB	Bacillus subtilis subsp. subtilis str. 168	45.283	80.916	0.366