Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DP112_RS00890 Genome accession   NZ_CP030125
Coordinates   138177..138572 (+) Length   131 a.a.
NCBI ID   WP_114866125.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 133177..143572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS00860 (DP112_00860) pepA 133544..134605 (-) 1062 WP_114866119.1 glutamyl aminopeptidase -
  DP112_RS00865 (DP112_00865) - 135054..135338 (+) 285 WP_114866120.1 DUF4651 domain-containing protein -
  DP112_RS00870 (DP112_00870) - 135335..135655 (+) 321 WP_114866121.1 thioredoxin family protein -
  DP112_RS00875 (DP112_00875) - 135699..136655 (+) 957 WP_114866122.1 DUF1002 domain-containing protein -
  DP112_RS00880 (DP112_00880) ytpR 136674..137297 (+) 624 WP_114866123.1 YtpR family tRNA-binding protein -
  DP112_RS00885 (DP112_00885) - 137333..138112 (-) 780 WP_114866124.1 DUF2785 domain-containing protein -
  DP112_RS00890 (DP112_00890) ssbA 138177..138572 (+) 396 WP_114866125.1 single-stranded DNA-binding protein Machinery gene
  DP112_RS00895 (DP112_00895) tnpA 138830..139303 (+) 474 WP_044685873.1 IS200/IS605 family transposase -
  DP112_RS00900 (DP112_00900) - 139442..139687 (-) 246 WP_114866126.1 hypothetical protein -
  DP112_RS00905 (DP112_00905) groES 139885..140166 (+) 282 WP_014637330.1 co-chaperone GroES -
  DP112_RS00910 (DP112_00910) groL 140177..141799 (+) 1623 WP_024393522.1 chaperonin GroEL -
  DP112_RS00915 (DP112_00915) rpsL 142031..142444 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  DP112_RS00920 (DP112_00920) rpsG 142461..142931 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14867.70 Da        Isoelectric Point: 5.0026

>NTDB_id=299472 DP112_RS00890 WP_114866125.1 138177..138572(+) (ssbA) [Streptococcus suis strain HA1003]
MYNKTILIGRLTAQPELTQTPNGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISVDGELRTR
KYEKDGSNHYVTEILGNTFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=299472 DP112_RS00890 WP_114866125.1 138177..138572(+) (ssbA) [Streptococcus suis strain HA1003]
ATGTATAATAAAACAATTCTAATCGGTCGCTTGACGGCCCAACCTGAACTCACTCAAACCCCTAACGGCAAAAATCTGAC
CCGTGTAACCGTCGCAGTCAACCGCCGTTTCAAGACGGAGAATGGTGAACGGGAAGCAGATTTTCTCAATGTTATTTTCT
GGGGCAAACTGGCGGAAACACTTGTTTCCTATGGTAGCAAGGGCAGTCTGATTTCTGTTGACGGTGAATTGCGGACCCGT
AAATACGAAAAAGACGGCAGCAACCACTATGTGACCGAAATTTTGGGCAATACTTTCCAGCTGCTCGAAAGCCGTGCCCA
ACGTGCTATGCGAGAAAACAATACTGGCGATGACCTAGCTGATTTGGTCTTGGAAGAGGAAGAATTGCCGTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.046

100

0.74
  ssbB/cilA Streptococcus pneumoniae TIGR4

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae D39

72.519

100

0.725
  ssbB/cilA Streptococcus mitis SK321

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae R6

72.519

100

0.725
  ssbB/cilA Streptococcus mitis NCTC 12261

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

72.519

100

0.725
  ssbB Lactococcus lactis subsp. cremoris KW2

65.179

85.496

0.557
  ssb Latilactobacillus sakei subsp. sakei 23K

45.133

86.26

0.389
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.17

80.916

0.382
  ssbB Bacillus subtilis subsp. subtilis str. 168

45.283

80.916

0.366

Multiple sequence alignment