Detailed information
Bioinformatically predicted
Overview
| Name | comYC | Type | Machinery gene |
| Locus tag | DK235_RS00765 | Genome accession | NZ_CP030017 |
| Coordinates | 121731..122012 (+) | Length | 93 a.a. |
| NCBI ID | WP_053865943.1 | Uniprot ID | - |
| Organism | Streptococcus suis strain ISU1606 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 116731..127012
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DK235_RS00745 (DK235_00795) | - | 118401..118766 (+) | 366 | WP_002936568.1 | DUF1033 family protein | - |
| DK235_RS00750 (DK235_00800) | - | 118801..119744 (-) | 944 | Protein_115 | S66 peptidase family protein | - |
| DK235_RS00755 (DK235_00805) | comYA | 119830..120780 (+) | 951 | WP_011921718.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DK235_RS00760 (DK235_00810) | comYB | 120692..121729 (+) | 1038 | WP_011921719.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| DK235_RS00765 (DK235_00815) | comYC | 121731..122012 (+) | 282 | WP_053865943.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DK235_RS00770 (DK235_00820) | comGD | 121993..122400 (+) | 408 | WP_011921721.1 | competence type IV pilus minor pilin ComGD | - |
| DK235_RS00775 (DK235_00825) | comYE | 122372..122665 (+) | 294 | WP_011921722.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| DK235_RS00780 (DK235_00830) | comGF/cglF | 122652..123086 (+) | 435 | WP_011922561.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| DK235_RS00785 (DK235_00835) | comGG | 123064..123474 (+) | 411 | WP_011921724.1 | competence type IV pilus minor pilin ComGG | - |
| DK235_RS00790 (DK235_00840) | comYH | 123531..124484 (+) | 954 | WP_011922562.1 | class I SAM-dependent methyltransferase | Machinery gene |
| DK235_RS00795 (DK235_00845) | - | 124534..125721 (+) | 1188 | WP_012775422.1 | acetate kinase | - |
| DK235_RS00800 (DK235_00850) | - | 126036..126587 (+) | 552 | WP_012774908.1 | folate family ECF transporter S component | - |
Sequence
Protein
Download Length: 93 a.a. Molecular weight: 10436.39 Da Isoelectric Point: 7.0117
>NTDB_id=298303 DK235_RS00765 WP_053865943.1 121731..122012(+) (comYC) [Streptococcus suis strain ISU1606]
MKKLVEMKVKGFTLVEMLVVLGIISLLLLLFVPNLSQQKDAIQKKGDAVVVKVVESQMELYELEHDEEATVADLQAKGYI
TEKQAKQYATAKK
MKKLVEMKVKGFTLVEMLVVLGIISLLLLLFVPNLSQQKDAIQKKGDAVVVKVVESQMELYELEHDEEATVADLQAKGYI
TEKQAKQYATAKK
Nucleotide
Download Length: 282 bp
>NTDB_id=298303 DK235_RS00765 WP_053865943.1 121731..122012(+) (comYC) [Streptococcus suis strain ISU1606]
ATGAAAAAATTAGTTGAAATGAAGGTAAAAGGGTTCACTCTGGTGGAAATGTTGGTCGTTTTAGGGATCATTAGCCTGCT
CTTGCTCCTCTTTGTGCCAAATTTGAGCCAGCAGAAGGATGCTATTCAGAAGAAGGGGGATGCGGTTGTTGTCAAAGTAG
TGGAGAGTCAGATGGAGCTCTATGAATTGGAACATGACGAGGAAGCAACGGTGGCAGATTTGCAGGCGAAAGGTTATATT
ACTGAAAAACAAGCAAAACAGTATGCTACGGCGAAAAAATAA
ATGAAAAAATTAGTTGAAATGAAGGTAAAAGGGTTCACTCTGGTGGAAATGTTGGTCGTTTTAGGGATCATTAGCCTGCT
CTTGCTCCTCTTTGTGCCAAATTTGAGCCAGCAGAAGGATGCTATTCAGAAGAAGGGGGATGCGGTTGTTGTCAAAGTAG
TGGAGAGTCAGATGGAGCTCTATGAATTGGAACATGACGAGGAAGCAACGGTGGCAGATTTGCAGGCGAAAGGTTATATT
ACTGAAAAACAAGCAAAACAGTATGCTACGGCGAAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYC | Streptococcus suis isolate S10 |
98.925 |
100 |
0.989 |
| comGC/cglC | Streptococcus mitis SK321 |
67.059 |
91.398 |
0.613 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
67.059 |
91.398 |
0.613 |
| comGC/cglC | Streptococcus pneumoniae D39 |
69.136 |
87.097 |
0.602 |
| comGC/cglC | Streptococcus pneumoniae R6 |
69.136 |
87.097 |
0.602 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
69.136 |
87.097 |
0.602 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
69.136 |
87.097 |
0.602 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
60.674 |
95.699 |
0.581 |
| comYC | Streptococcus mutans UA140 |
59.091 |
94.624 |
0.559 |
| comYC | Streptococcus mutans UA159 |
59.091 |
94.624 |
0.559 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
55.682 |
94.624 |
0.527 |
| comGC | Staphylococcus aureus N315 |
48.718 |
83.871 |
0.409 |
| comGC | Staphylococcus aureus MW2 |
48.718 |
83.871 |
0.409 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
49.333 |
80.645 |
0.398 |
| comGC | Latilactobacillus sakei subsp. sakei 23K |
42.5 |
86.022 |
0.366 |