Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BCERKBAB4_RS10290 Genome accession   NC_010184
Coordinates   2056979..2057317 (+) Length   112 a.a.
NCBI ID   WP_012260818.1    Uniprot ID   A9VSZ2
Organism   Bacillus mycoides KBAB4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2051979..2062317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCERKBAB4_RS10265 (BcerKBAB4_1998) - 2052335..2053012 (-) 678 WP_002012555.1 hypothetical protein -
  BCERKBAB4_RS10270 (BcerKBAB4_1999) - 2053122..2053769 (+) 648 WP_002065130.1 HD domain-containing protein -
  BCERKBAB4_RS10275 (BcerKBAB4_2000) - 2053766..2055661 (+) 1896 WP_002127139.1 ABC-F family ATP-binding cassette domain-containing protein -
  BCERKBAB4_RS10280 (BcerKBAB4_2001) - 2055737..2056468 (+) 732 WP_002127140.1 Bax inhibitor-1/YccA family protein -
  BCERKBAB4_RS10285 (BcerKBAB4_2002) - 2056563..2056817 (+) 255 WP_002012563.1 DUF4318 domain-containing protein -
  BCERKBAB4_RS10290 (BcerKBAB4_2003) ssbA 2056979..2057317 (+) 339 WP_012260818.1 single-stranded DNA-binding protein Machinery gene
  BCERKBAB4_RS10295 (BcerKBAB4_2004) - 2057367..2057957 (-) 591 WP_012260819.1 TetR/AcrR family transcriptional regulator -
  BCERKBAB4_RS10300 (BcerKBAB4_2005) - 2058102..2059235 (-) 1134 WP_012260820.1 FAD-dependent oxidoreductase -
  BCERKBAB4_RS10305 (BcerKBAB4_2006) - 2059493..2060620 (+) 1128 WP_012260821.1 conserved virulence factor C family protein -
  BCERKBAB4_RS10310 (BcerKBAB4_2007) - 2060624..2061007 (+) 384 WP_002085930.1 thiol-disulfide oxidoreductase DCC family protein -
  BCERKBAB4_RS10315 (BcerKBAB4_2008) - 2061090..2061524 (+) 435 WP_002012568.1 BrxA/BrxB family bacilliredoxin -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12923.73 Da        Isoelectric Point: 9.1002

>NTDB_id=29792 BCERKBAB4_RS10290 WP_012260818.1 2056979..2057317(+) (ssbA) [Bacillus mycoides KBAB4]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVIWRRSAENVTEYCTKGSLVGITGRIHTS
NYDDEQGKRVYRTEVLIESITFLERRREGASQ

Nucleotide


Download         Length: 339 bp        

>NTDB_id=29792 BCERKBAB4_RS10290 WP_012260818.1 2056979..2057317(+) (ssbA) [Bacillus mycoides KBAB4]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGTGTCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGTTTTCGAAATAGTTTAGGTGAGCAACAAGTAGATTTTATTAATTGTGTAATTT
GGAGAAGGTCGGCTGAAAATGTAACAGAATATTGTACGAAGGGCTCACTTGTTGGGATTACAGGGCGTATTCATACGAGT
AATTACGATGATGAACAAGGAAAGAGAGTATATAGAACTGAAGTTCTGATTGAGAGCATTACATTTCTGGAGAGAAGGAG
GGAGGGGGCATCGCAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A9VSZ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

94.643

0.554
  ssb Latilactobacillus sakei subsp. sakei 23K

51.261

100

0.545
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.442

100

0.509
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

98.214

0.429
  ssbB Lactococcus lactis subsp. cremoris KW2

44.762

93.75

0.42
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.727

98.214

0.42
  ssbA Streptococcus mutans UA159

41.818

98.214

0.411
  ssbB/cilA Streptococcus pneumoniae Rx1

41.818

98.214

0.411
  ssbB/cilA Streptococcus pneumoniae D39

41.818

98.214

0.411
  ssbB/cilA Streptococcus pneumoniae R6

41.818

98.214

0.411
  ssbB/cilA Streptococcus mitis SK321

41.818

98.214

0.411
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

98.214

0.402

Multiple sequence alignment