Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   EQW70_RS10730 Genome accession   NZ_CP035226
Coordinates   2116163..2117938 (-) Length   591 a.a.
NCBI ID   WP_049141166.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103517     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2111163..2122938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQW70_RS10710 (EQW70_10710) desE 2111536..2112594 (+) 1059 WP_004399588.1 fatty acid desaturase DesE -
  EQW70_RS10715 (EQW70_10715) desK 2112714..2113826 (+) 1113 WP_015251908.1 two-component sensor histidine kinase DesK -
  EQW70_RS10720 (EQW70_10720) desR 2113845..2114444 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  EQW70_RS10725 (EQW70_10725) walN 2115052..2115915 (-) 864 WP_021481459.1 3D domain-containing protein -
  EQW70_RS10730 (EQW70_10730) recQ 2116163..2117938 (-) 1776 WP_049141166.1 DNA helicase RecQ Machinery gene
  EQW70_RS10745 (EQW70_10745) azoJ 2118503..2119129 (-) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  EQW70_RS10750 (EQW70_10750) stpP 2119281..2119772 (-) 492 WP_049141167.1 TraR/DksA family transcriptional regulator -
  EQW70_RS10755 (EQW70_10755) - 2119847..2120179 (-) 333 WP_014480020.1 hypothetical protein -
  EQW70_RS10760 (EQW70_10760) - 2120257..2120484 (+) 228 WP_049141168.1 hypothetical protein -
  EQW70_RS10765 (EQW70_10765) yocM 2120471..2120947 (-) 477 WP_049141169.1 salt stress-responsive protein YocM -
  EQW70_RS10770 (EQW70_10770) - 2121014..2121277 (+) 264 WP_004399338.1 hypothetical protein -
  EQW70_RS10775 (EQW70_10775) - 2121283..2121516 (+) 234 WP_003231251.1 hypothetical protein -
  EQW70_RS10780 (EQW70_10780) yozO 2121610..2121954 (-) 345 WP_003220141.1 PH domain-containing protein -
  EQW70_RS10785 (EQW70_10785) yozC 2122310..2122513 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67369.81 Da        Isoelectric Point: 6.2904

>NTDB_id=294238 EQW70_RS10730 WP_049141166.1 2116163..2117938(-) (recQ) [Bacillus subtilis strain SRCM103517]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVNALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGLADDERKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=294238 EQW70_RS10730 WP_049141166.1 2116163..2117938(-) (recQ) [Bacillus subtilis strain SRCM103517]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAAATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATATCACCGTTGATTTCCTTGATGAAGGATCAAGTTAATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAGGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCAGTCATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCCGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAGGTCAGGGCAGGCCGGTATCATGGAGGTTTGGCTGATGA
TGAGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATTAGATTTGTTCTGCATGCACAAATTCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGCCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGCTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACCGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTGATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCCCAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGCTTTTCAGACCTTTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGCGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGCAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGAGC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(403-507)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)

HRDC domain (HRDC)

(518-583)

DEAD/DEAH box helicase (DEAD)

(21-182)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.492

100

0.995

Multiple sequence alignment