Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   DL538_RS19480 Genome accession   NZ_CP029609
Coordinates   3732788..3733129 (-) Length   113 a.a.
NCBI ID   WP_014478203.1    Uniprot ID   A0A0C3GLH9
Organism   Bacillus subtilis subsp. subtilis strain G7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3727788..3738129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL538_RS19465 (DL538_19365) hepAB 3728028..3730796 (+) 2769 WP_088467425.1 DEAD/DEAH box helicase -
  DL538_RS19470 (DL538_19370) ywpJ 3730924..3731781 (-) 858 WP_017696583.1 phosphatase YwpJ -
  DL538_RS19475 (DL538_19375) glcR 3731787..3732563 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  DL538_RS19480 (DL538_19380) ssbB 3732788..3733129 (-) 342 WP_014478203.1 single-stranded DNA-binding protein SsbB Machinery gene
  DL538_RS19485 (DL538_19385) ywpG 3733206..3733589 (-) 384 WP_003227796.1 DynA interaction protein YwpG -
  DL538_RS19490 (DL538_19390) ywpF 3733764..3734174 (+) 411 WP_003227794.1 YwpF-like family protein -
  DL538_RS19495 (DL538_19395) - 3734300..3734692 (-) 393 Protein_3779 class A sortase -
  DL538_RS22440 - 3734679..3735056 (-) 378 WP_250635025.1 SpaA isopeptide-forming pilin-related protein -
  DL538_RS19500 (DL538_19400) ywpD 3734940..3735776 (+) 837 WP_003227787.1 histidine kinase -
  DL538_RS19505 (DL538_19405) mscL 3735823..3736215 (-) 393 WP_003242893.1 large conductance mechanosensitive channel protein MscL -
  DL538_RS19510 (DL538_19410) fabZ 3736288..3736713 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DL538_RS19515 (DL538_19415) rapD 3736905..3737969 (+) 1065 WP_029318731.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12462.11 Da        Isoelectric Point: 7.8150

>NTDB_id=294159 DL538_RS19480 WP_014478203.1 3732788..3733129(-) (ssbB) [Bacillus subtilis subsp. subtilis strain G7]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=294159 DL538_RS19480 WP_014478203.1 3732788..3733129(-) (ssbB) [Bacillus subtilis subsp. subtilis strain G7]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C3GLH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

99.115

100

0.991
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment