Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   DK182_RS09615 Genome accession   NZ_CP029491
Coordinates   1966058..1966453 (-) Length   131 a.a.
NCBI ID   WP_109833694.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain 10919     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1961058..1971453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK182_RS09590 (DK181_09590) - 1961215..1961562 (+) 348 WP_019769498.1 DUF975 family protein -
  DK182_RS09595 (DK181_09595) groL 1961819..1963444 (-) 1626 WP_019772051.1 chaperonin GroEL -
  DK182_RS09600 (DK181_09600) groES 1963663..1963947 (-) 285 WP_019775430.1 co-chaperone GroES -
  DK182_RS09605 (DK181_09605) - 1964428..1965222 (-) 795 WP_109833693.1 Cof-type HAD-IIB family hydrolase -
  DK182_RS09615 (DK181_09615) ssbB 1966058..1966453 (-) 396 WP_109833694.1 single-stranded DNA-binding protein Machinery gene
  DK182_RS09620 (DK181_09620) ytpR 1966566..1967192 (-) 627 WP_019784721.1 YtpR family tRNA-binding protein -
  DK182_RS09625 (DK181_09625) - 1967214..1967531 (-) 318 WP_004205745.1 thioredoxin family protein -
  DK182_RS09630 (DK181_09630) - 1967524..1967814 (-) 291 WP_109833695.1 DUF4651 domain-containing protein -
  DK182_RS09635 (DK181_09635) pepA 1968083..1969150 (+) 1068 WP_109833696.1 glutamyl aminopeptidase -
  DK182_RS09640 (DK181_09640) proC 1969212..1969982 (+) 771 WP_109833697.1 pyrroline-5-carboxylate reductase -
  DK182_RS09645 (DK181_09645) - 1970360..1971116 (-) 757 Protein_1821 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14796.76 Da        Isoelectric Point: 6.2395

>NTDB_id=293235 DK182_RS09615 WP_109833694.1 1966058..1966453(-) (ssbB) [Streptococcus sobrinus strain 10919]
MYNKVILIGRLTAVPEMVKTPSNKSVTHITLAVNRRFKTQDGERQADFVNVVFWGKLAESLVSYAGKGSLVSLDGEIRTR
HYEKDGQTHYVTEILAQSFQLLESRAQRALRENNGASDLTDLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=293235 DK182_RS09615 WP_109833694.1 1966058..1966453(-) (ssbB) [Streptococcus sobrinus strain 10919]
ATGTATAACAAAGTCATTCTTATCGGTCGTTTGACAGCAGTTCCCGAGATGGTTAAAACACCCTCGAATAAATCTGTTAC
TCACATTACTCTAGCGGTTAATCGCCGTTTTAAAACTCAGGATGGCGAGCGGCAGGCTGACTTTGTCAATGTTGTTTTCT
GGGGCAAGTTGGCTGAAAGCCTAGTTTCTTATGCCGGCAAGGGCAGTTTGGTTTCCTTAGATGGGGAAATTAGAACCCGC
CACTACGAAAAGGATGGCCAGACCCACTATGTAACTGAAATCCTAGCCCAGTCCTTCCAGCTGCTAGAAAGCCGTGCCCA
ACGTGCCCTGAGGGAAAACAATGGAGCCAGTGACCTAACCGACCTAGTCCTCGAAGAAGAGGAACTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Streptococcus sobrinus strain NIDR 6715-7

99.237

100

0.992
  ssbA Streptococcus mutans UA159

78.626

100

0.786
  ssbB/cilA Streptococcus mitis NCTC 12261

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

70.229

100

0.702
  ssbB Lactococcus lactis subsp. cremoris KW2

63.393

85.496

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

45.763

90.076

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397
  ssbB Bacillus subtilis subsp. subtilis str. 168

45.37

82.443

0.374

Multiple sequence alignment