Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | DKG76_RS19215 | Genome accession | NZ_CP029465 |
| Coordinates | 3833240..3833581 (-) | Length | 113 a.a. |
| NCBI ID | WP_003235640.1 | Uniprot ID | A0A9Q4EUF4 |
| Organism | Bacillus inaquosorum strain KCTC 13429 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3828240..3838581
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DKG76_RS19200 (DKG76_19200) | - | 3828485..3831253 (+) | 2769 | WP_003235636.1 | DEAD/DEAH box helicase | - |
| DKG76_RS19205 (DKG76_19205) | - | 3831381..3832238 (-) | 858 | WP_003235638.1 | Cof-type HAD-IIB family hydrolase | - |
| DKG76_RS19210 (DKG76_19210) | glcR | 3832244..3833020 (-) | 777 | WP_019259680.1 | transcriptional regulator GlcR | - |
| DKG76_RS19215 (DKG76_19215) | ssbB | 3833240..3833581 (-) | 342 | WP_003235640.1 | single-stranded DNA-binding protein SsbB | Machinery gene |
| DKG76_RS19220 (DKG76_19220) | - | 3833658..3834041 (-) | 384 | WP_003235643.1 | hypothetical protein | - |
| DKG76_RS19225 (DKG76_19225) | - | 3834217..3834627 (+) | 411 | WP_032731815.1 | YwpF-like family protein | - |
| DKG76_RS19230 (DKG76_19230) | - | 3834649..3835452 (+) | 804 | WP_003235647.1 | class D beta-lactamase BSU-1 | - |
| DKG76_RS19235 (DKG76_19235) | - | 3835525..3836181 (-) | 657 | WP_032731665.1 | class A sortase | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 12506.16 Da Isoelectric Point: 7.8150
>NTDB_id=292766 DKG76_RS19215 WP_003235640.1 3833240..3833581(-) (ssbB) [Bacillus inaquosorum strain KCTC 13429]
MFNQVMLVGRLTKDPELRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKTAD
MFNQVMLVGRLTKDPELRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKTAD
Nucleotide
Download Length: 342 bp
>NTDB_id=292766 DKG76_RS19215 WP_003235640.1 3833240..3833581(-) (ssbB) [Bacillus inaquosorum strain KCTC 13429]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGAGCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACACGTTACGCTCGCGGTAAACCGCAGCTTCAAAAATGCTTCAGGTGAAATTGAGGCCGATTATGTCAATTGCACGCTTT
GGAGAAAAACTGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATCCAGACAAGG
AGCTATGAAAACGCAGAAGGCGTTAACGTGTATGTAACGGAAGTGTTGGCTGATACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAACGGCCGATTGA
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGAGCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACACGTTACGCTCGCGGTAAACCGCAGCTTCAAAAATGCTTCAGGTGAAATTGAGGCCGATTATGTCAATTGCACGCTTT
GGAGAAAAACTGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATCCAGACAAGG
AGCTATGAAAACGCAGAAGGCGTTAACGTGTATGTAACGGAAGTGTTGGCTGATACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAACGGCCGATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
97.345 |
100 |
0.973 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.094 |
93.805 |
0.611 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.491 |
93.805 |
0.549 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
46.296 |
95.575 |
0.442 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
45.37 |
95.575 |
0.434 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
45.37 |
95.575 |
0.434 |
| ssbA | Streptococcus mutans UA159 |
45.283 |
93.805 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus mitis SK321 |
44.444 |
95.575 |
0.425 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
42.857 |
92.92 |
0.398 |