Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DF184_RS09775 Genome accession   NZ_CP029398
Coordinates   1980616..1981032 (-) Length   138 a.a.
NCBI ID   WP_109372023.1    Uniprot ID   -
Organism   Streptococcus suis strain HN105     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1975616..1986032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS09715 (DF184_09715) - 1975954..1976283 (-) 330 WP_109372013.1 HNH endonuclease signature motif containing protein -
  DF184_RS09720 (DF184_09720) - 1976280..1976570 (-) 291 WP_109372015.1 hypothetical protein -
  DF184_RS09725 (DF184_09725) - 1976737..1977312 (-) 576 WP_024406262.1 tyrosine-type recombinase/integrase -
  DF184_RS09730 (DF184_09730) - 1977441..1977905 (-) 465 WP_024406261.1 hypothetical protein -
  DF184_RS09735 (DF184_09735) - 1977877..1978110 (-) 234 WP_109372017.1 hypothetical protein -
  DF184_RS09740 (DF184_09740) - 1978242..1978637 (-) 396 WP_024406259.1 hypothetical protein -
  DF184_RS09745 (DF184_09745) - 1978621..1978890 (-) 270 WP_024411082.1 hypothetical protein -
  DF184_RS09750 (DF184_09750) - 1978887..1979351 (-) 465 WP_162564112.1 hypothetical protein -
  DF184_RS09755 (DF184_09755) - 1979389..1979568 (-) 180 WP_044669540.1 hypothetical protein -
  DF184_RS09765 (DF184_09765) - 1979812..1980198 (-) 387 WP_109372021.1 hypothetical protein -
  DF184_RS09770 (DF184_09770) - 1980337..1980606 (-) 270 WP_024411081.1 hypothetical protein -
  DF184_RS09775 (DF184_09775) ssbA 1980616..1981032 (-) 417 WP_109372023.1 single-stranded DNA-binding protein Machinery gene
  DF184_RS09780 (DF184_09780) - 1981182..1981586 (-) 405 WP_109372025.1 hypothetical protein -
  DF184_RS09785 (DF184_09785) - 1981613..1981822 (-) 210 WP_109372026.1 hypothetical protein -
  DF184_RS09790 (DF184_09790) - 1981969..1982376 (-) 408 WP_109372028.1 YopX family protein -
  DF184_RS09795 (DF184_09795) - 1982649..1982867 (-) 219 WP_105125702.1 hypothetical protein -
  DF184_RS09800 (DF184_09800) - 1982855..1983655 (-) 801 WP_109372030.1 phage replisome organizer N-terminal domain-containing protein -
  DF184_RS10965 - 1983639..1983815 (-) 177 WP_153308618.1 hypothetical protein -
  DF184_RS09805 (DF184_09805) - 1983818..1984072 (-) 255 WP_109372032.1 hypothetical protein -
  DF184_RS09810 (DF184_09810) - 1984074..1984262 (-) 189 WP_044762337.1 hypothetical protein -
  DF184_RS09815 (DF184_09815) - 1984259..1984543 (-) 285 WP_105115947.1 DNA-binding protein -
  DF184_RS09820 (DF184_09820) - 1984586..1984930 (-) 345 WP_044762339.1 hypothetical protein -
  DF184_RS11300 - 1984927..1985061 (-) 135 WP_261308515.1 hypothetical protein -
  DF184_RS09825 (DF184_09825) - 1985064..1985273 (-) 210 WP_109372034.1 helix-turn-helix transcriptional regulator -
  DF184_RS10970 - 1985291..1985452 (-) 162 WP_162564113.1 hypothetical protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15666.55 Da        Isoelectric Point: 5.1862

>NTDB_id=292296 DF184_RS09775 WP_109372023.1 1980616..1981032(-) (ssbA) [Streptococcus suis strain HN105]
MINNVVLVGRLTRDVELRYTPSNQAVATFTLAVNRNFKNQSTGEREADFINCVMWRQQAENLANWTKKGHLIGITGRIQT
RSYDNQQGQRVYVTEVVAESFQVLEKRDNAANQASMEEQMPPNFAGQPMDITDDGLPF

Nucleotide


Download         Length: 417 bp        

>NTDB_id=292296 DF184_RS09775 WP_109372023.1 1980616..1981032(-) (ssbA) [Streptococcus suis strain HN105]
ATGATTAATAATGTTGTTTTGGTCGGTAGATTGACGAGGGACGTAGAGCTACGTTATACACCGTCTAATCAAGCCGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAATCGACAGGAGAGCGGGAAGCTGACTTTATCAATTGCGTGA
TGTGGCGTCAGCAGGCCGAAAATCTGGCTAATTGGACCAAGAAAGGTCACTTGATTGGTATTACTGGTCGAATCCAGACA
CGGAGCTACGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTTGTCGCTGAGAGTTTCCAGGTATTGGAAAAGCG
TGATAATGCAGCTAATCAAGCAAGTATGGAAGAACAGATGCCACCTAATTTTGCTGGCCAGCCGATGGATATTACTGATG
ATGGCTTGCCGTTTTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.601

100

0.659
  ssb Latilactobacillus sakei subsp. sakei 23K

52.632

100

0.652
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.14

82.609

0.464
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.972

100

0.449
  ssbB/cilA Streptococcus pneumoniae Rx1

43.262

100

0.442
  ssbB/cilA Streptococcus mitis NCTC 12261

43.262

100

0.442
  ssbB/cilA Streptococcus pneumoniae D39

43.262

100

0.442
  ssbB/cilA Streptococcus pneumoniae R6

43.262

100

0.442
  ssbB/cilA Streptococcus mitis SK321

43.262

100

0.442
  ssbA Streptococcus mutans UA159

41.304

100

0.413
  ssbB Streptococcus sobrinus strain NIDR 6715-7

52.336

77.536

0.406
  ssbB Lactococcus lactis subsp. cremoris KW2

43.86

82.609

0.362

Multiple sequence alignment