Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   DIC78_RS12820 Genome accession   NZ_CP029364
Coordinates   2500813..2501154 (+) Length   113 a.a.
NCBI ID   WP_106019692.1    Uniprot ID   -
Organism   Bacillus halotolerans strain ZB201702     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2495813..2506154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIC78_RS12785 (DIC78_12810) - 2495901..2496710 (+) 810 WP_024123118.1 flagellar hook-basal body protein -
  DIC78_RS12790 (DIC78_12815) - 2496732..2497796 (-) 1065 WP_024123117.1 tetratricopeptide repeat protein -
  DIC78_RS12795 (DIC78_12820) fabZ 2497990..2498415 (+) 426 WP_106019694.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DIC78_RS12800 (DIC78_12825) mscL 2498487..2498879 (+) 393 WP_024123115.1 large conductance mechanosensitive channel protein MscL -
  DIC78_RS12805 (DIC78_12830) blaOXA 2498911..2499714 (-) 804 WP_101859828.1 class D beta-lactamase -
  DIC78_RS12810 (DIC78_12835) - 2499766..2500176 (-) 411 WP_059292379.1 YwpF-like family protein -
  DIC78_RS12815 (DIC78_12840) - 2500352..2500735 (+) 384 WP_024123112.1 hypothetical protein -
  DIC78_RS12820 (DIC78_12845) ssbB 2500813..2501154 (+) 342 WP_106019692.1 single-stranded DNA-binding protein SsbB Machinery gene
  DIC78_RS12825 (DIC78_12850) - 2501381..2502157 (+) 777 WP_106019942.1 DeoR/GlpR family DNA-binding transcription regulator -
  DIC78_RS12830 (DIC78_12855) - 2502163..2503020 (+) 858 WP_127696397.1 Cof-type HAD-IIB family hydrolase -
  DIC78_RS12835 (DIC78_12860) - 2503144..2505918 (-) 2775 WP_127696398.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12566.36 Da        Isoelectric Point: 9.0096

>NTDB_id=291980 DIC78_RS12820 WP_106019692.1 2500813..2501154(+) (ssbB) [Bacillus halotolerans strain ZB201702]
MFNQVMLVGRLTKDPELRYTSAGAAVTHITIAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCKKGSLVGLSGRIQTR
SYENAEGVKVYVTEVMADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=291980 DIC78_RS12820 WP_106019692.1 2500813..2501154(+) (ssbB) [Bacillus halotolerans strain ZB201702]
ATGTTCAATCAGGTCATGCTTGTCGGACGTTTAACAAAAGACCCTGAGCTTCGGTACACTTCTGCAGGCGCGGCAGTCAC
ACACATTACGATTGCAGTTAACCGCAGCTTCAAAAATGCTTCAGGAGAAATTGAAGCGGATTACGTCAATTGCACGCTTT
GGAGAAAAACGGCCGAAAACACGGCGTTATATTGCAAAAAAGGCTCTCTCGTCGGCCTAAGCGGACGGATTCAGACAAGG
AGCTATGAAAATGCGGAAGGTGTCAAAGTGTACGTAACTGAAGTGATGGCTGATACTGTTCGTTTTATGGACCCTAAACC
TCGGGAAAAAGCTGCCGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

92.035

100

0.92
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.208

93.805

0.593
  ssb Latilactobacillus sakei subsp. sakei 23K

58.491

93.805

0.549
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.222

95.575

0.451
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis NCTC 12261

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

42.593

95.575

0.407
  ssbB/cilA Streptococcus pneumoniae D39

42.593

95.575

0.407
  ssbB/cilA Streptococcus pneumoniae R6

42.593

95.575

0.407
  ssbB/cilA Streptococcus mitis SK321

42.593

95.575

0.407
  ssbB Lactococcus lactis subsp. cremoris KW2

40.952

92.92

0.381

Multiple sequence alignment