Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   DGM98_RS16355 Genome accession   NZ_CP029275
Coordinates   3755423..3755851 (-) Length   142 a.a.
NCBI ID   WP_007962467.1    Uniprot ID   -
Organism   Xanthomonas citri strain M11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3756197..3764705 3755423..3755851 flank 346


Gene organization within MGE regions


Location: 3755423..3764705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGM98_RS16355 (DGM98_17100) comP 3755423..3755851 (-) 429 WP_007962467.1 pilin Machinery gene
  DGM98_RS16360 (DGM98_17105) pilC 3756197..3757456 (+) 1260 WP_033836749.1 type II secretion system F family protein Machinery gene
  DGM98_RS16365 (DGM98_17110) - 3757463..3758326 (+) 864 WP_003491180.1 A24 family peptidase -
  DGM98_RS16370 (DGM98_17115) coaE 3758340..3758951 (+) 612 WP_099802201.1 dephospho-CoA kinase -
  DGM98_RS16375 (DGM98_17120) - 3759610..3763662 (+) 4053 WP_244242164.1 RHS repeat-associated core domain-containing protein -
  DGM98_RS16380 (DGM98_17125) - 3764308..3764520 (+) 213 WP_099802202.1 hypothetical protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 14527.67 Da        Isoelectric Point: 8.4798

>NTDB_id=291557 DGM98_RS16355 WP_007962467.1 3755423..3755851(-) (comP) [Xanthomonas citri strain M11]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSELAVMASSFKTTVAENIANNGGTLPADACVGVGATAATTN
MASIACTPATGNIVVTGDATRTKGTVLTYAPTVGAANSAVGTTWTCTGSGSQSKYYPAECRR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=291557 DGM98_RS16355 WP_007962467.1 3755423..3755851(-) (comP) [Xanthomonas citri strain M11]
ATGAAGAAGCAACAAGGCTTTACCCTGATCGAATTGATGATCGTTGTTGCGATCATCGCAATCCTGGCTGCCATTGCTCT
TCCGGCTTATCAGGACTACACCATTCGCTCGCGTGTTTCGGAACTGGCCGTGATGGCTAGCTCCTTTAAGACGACCGTTG
CGGAAAACATCGCCAACAACGGCGGCACCCTGCCAGCTGACGCTTGCGTCGGCGTTGGTGCTACCGCTGCGACCACTAAT
ATGGCTTCCATCGCTTGCACTCCCGCGACTGGCAACATCGTCGTAACCGGCGATGCAACTCGGACCAAGGGCACCGTTTT
GACCTATGCTCCCACAGTGGGTGCTGCTAACTCGGCGGTTGGTACCACTTGGACCTGCACTGGCAGTGGTAGCCAGTCCA
AGTACTATCCGGCCGAGTGCCGCCGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-141)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

54.305

100

0.577
  pilA2 Legionella pneumophila str. Paris

55.319

99.296

0.549
  pilA2 Legionella pneumophila strain ERS1305867

54.61

99.296

0.542
  pilA Ralstonia pseudosolanacearum GMI1000

41.566

100

0.486
  pilA Pseudomonas aeruginosa PAK

37.58

100

0.415
  pilA/pilA1 Eikenella corrodens VA1

39.073

100

0.415
  pilE Neisseria gonorrhoeae strain FA1090

34.94

100

0.408
  pilA/pilAI Pseudomonas stutzeri DSM 10701

39.86

100

0.401
  pilA/pilAII Pseudomonas stutzeri DSM 10701

39.583

100

0.401
  pilA Vibrio parahaemolyticus RIMD 2210633

42.636

90.845

0.387
  pilA Haemophilus influenzae 86-028NP

38.971

95.775

0.373

Multiple sequence alignment