Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   DG474_RS02100 Genome accession   NZ_CP029257
Coordinates   433420..433815 (+) Length   131 a.a.
NCBI ID   WP_000282436.1    Uniprot ID   A0A0F2DZ08
Organism   Streptococcus oralis strain CCUG 53468     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 428420..438815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS02075 (DG474_02125) - 429979..431052 (+) 1074 WP_255778691.1 N-acetylmuramoyl-L-alanine amidase family protein -
  DG474_RS02080 (DG474_02135) - 431285..431584 (+) 300 WP_002879788.1 DUF4651 domain-containing protein -
  DG474_RS02085 (DG474_02140) - 431581..431898 (+) 318 WP_000586556.1 thioredoxin family protein -
  DG474_RS02090 (DG474_02145) ytpR 431913..432539 (+) 627 WP_255778692.1 YtpR family tRNA-binding protein -
  DG474_RS02095 (DG474_02150) - 432581..433342 (+) 762 WP_255778693.1 SDR family oxidoreductase -
  DG474_RS02100 (DG474_02155) ssbB/cilA 433420..433815 (+) 396 WP_000282436.1 single-stranded DNA-binding protein Machinery gene
  DG474_RS02105 (DG474_02160) groES 433972..434256 (+) 285 WP_000917317.1 co-chaperone GroES -
  DG474_RS02110 (DG474_02165) groL 434272..435894 (+) 1623 WP_255778694.1 chaperonin GroEL -
  DG474_RS02115 (DG474_02170) - 436019..436786 (+) 768 WP_000567567.1 epoxyqueuosine reductase QueH -
  DG474_RS02120 (DG474_02175) - 436856..437389 (-) 534 WP_000775318.1 DUF402 domain-containing protein -
  DG474_RS02125 (DG474_02180) recX 437478..438254 (-) 777 WP_125391896.1 recombination regulator RecX -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14833.75 Da        Isoelectric Point: 5.9409

>NTDB_id=291406 DG474_RS02100 WP_000282436.1 433420..433815(+) (ssbB/cilA) [Streptococcus oralis strain CCUG 53468]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNLVLWGKLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLATGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=291406 DG474_RS02100 WP_000282436.1 433420..433815(+) (ssbB/cilA) [Streptococcus oralis strain CCUG 53468]
ATGTATAATAAAGTTATCTTGATTGGACGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC
TCGCGCAACTATTGCTGTGAACCGTCGTTACAAAGACCAAAATGGGGAACGTGAAGCTGACTTTGTCAATCTTGTTCTTT
GGGGGAAATTGGCTGAAACCTTGGCAAGCTACGCAACCAAAGGTAGTCTTATCTCTGTGGATGGAGAACTTCGTACCCGT
CGCTTTGAGAAAAATGGTCAAATGAACTATGTGACTGAAGTTCTTGCCACAGGATTCCAACTTTTGGAAAGCCGCGCCCA
ACGTGCTATGCGTGAAAATAACGCTGGACAGGATTTGGCAGACTTGGTTTTGGAAGAGGAGGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2DZ08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

97.71

100

0.977
  ssbB/cilA Streptococcus mitis NCTC 12261

96.947

100

0.969
  ssbB/cilA Streptococcus pneumoniae Rx1

96.947

100

0.969
  ssbB/cilA Streptococcus pneumoniae D39

96.947

100

0.969
  ssbB/cilA Streptococcus pneumoniae R6

96.947

100

0.969
  ssbB/cilA Streptococcus mitis SK321

96.947

100

0.969
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB Lactococcus lactis subsp. cremoris KW2

61.607

85.496

0.527
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.887

80.916

0.42
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

86.26

0.412
  ssbB Bacillus subtilis subsp. subtilis str. 168

46.296

82.443

0.382

Multiple sequence alignment